Johannes C. Paetzold

Orcid: 0000-0002-4844-6955

According to our database1, Johannes C. Paetzold authored at least 63 papers between 2019 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
Synthetic Optical Coherence Tomography Angiographs for Detailed Retinal Vessel Segmentation Without Human Annotations.
IEEE Trans. Medical Imaging, June, 2024

Machine Learning Analysis of Human Skin by Optoacoustic Mesoscopy for Automated Extraction of Psoriasis and Aging Biomarkers.
IEEE Trans. Medical Imaging, June, 2024

Physics-Regularized Multi-Modal Image Assimilation for Brain Tumor Localization.
CoRR, 2024

Efficient Betti Matching Enables Topology-Aware 3D Segmentation via Persistent Homology.
CoRR, 2024

TotalVibeSegmentator: Full Torso Segmentation for the NAKO and UK Biobank in Volumetric Interpolated Breath-hold Examination Body Images.
CoRR, 2024

QUBIQ: Uncertainty Quantification for Biomedical Image Segmentation Challenge.
CoRR, 2024

Cross-domain and Cross-dimension Learning for Image-to-Graph Transformers.
CoRR, 2024

Link Prediction for Flow-Driven Spatial Networks.
Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2024

Simulation-Based Segmentation of Blood Vessels in Cerebral 3D OCTA Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

3D Vessel Graph Generation Using Denoising Diffusion.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

Topologically Faithful Multi-class Segmentation in Medical Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

2023
Differentially Private Graph Neural Networks for Whole-Graph Classification.
IEEE Trans. Pattern Anal. Mach. Intell., June, 2023

Whole Brain Vasculature Analysis Using Advanced Learning Models (Fortgeschrittene Machine Learning Konzepte für die Analyse der Blutgefäße des Hirns)
PhD thesis, 2023

Learn-Morph-Infer: A new way of solving the inverse problem for brain tumor modeling.
Medical Image Anal., 2023

The Liver Tumor Segmentation Benchmark (LiTS).
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Medical Image Anal., 2023

Benchmarking the CoW with the TopCoW Challenge: Topology-Aware Anatomical Segmentation of the Circle of Willis for CTA and MRA.
CoRR, 2023

Detailed retinal vessel segmentation without human annotations using simulated optical coherence tomography angiographs.
CoRR, 2023

Clustering disease trajectories in contrastive feature space for biomarker discovery in age-related macular degeneration.
CoRR, 2023

Vesselformer: Towards Complete 3D Vessel Graph Generation from Images.
Proceedings of the Medical Imaging with Deep Learning, 2023

Self-pruning Graph Neural Network for Predicting Inflammatory Disease Activity in Multiple Sclerosis from Brain MR Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

Clustering Disease Trajectories in Contrastive Feature Space for Biomarker Proposal in Age-Related Macular Degeneration.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

Topologically Faithful Image Segmentation via Induced Matching of Persistence Barcodes.
Proceedings of the International Conference on Machine Learning, 2023

A skeletonization algorithm for gradient-based optimization.
Proceedings of the IEEE/CVF International Conference on Computer Vision, 2023

2022
Geometry-Aware Neural Solver for Fast Bayesian Calibration of Brain Tumor Models.
IEEE Trans. Medical Imaging, 2022

SRflow: Deep learning based super-resolution of 4D-flow MRI data.
Frontiers Artif. Intell., 2022

A Domain-specific Perceptual Metric via Contrastive Self-supervised Representation: Applications on Natural and Medical Images.
CoRR, 2022

Casting the inverse problem as a database query. The case of personalized tumor growth modeling.
CoRR, 2022

SoK: Differential Privacy on Graph-Structured Data.
CoRR, 2022

Differentially Private Graph Classification with GNNs.
CoRR, 2022

METGAN: Generative Tumour Inpainting and Modality Synthesis in Light Sheet Microscopy.
Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2022

A for-loop is all you need. For solving the inverse problem in the case of personalized tumor growth modeling.
Proceedings of the Machine Learning for Health, 2022

Can Collaborative Learning Be Private, Robust and Scalable?
Proceedings of the Distributed, Collaborative, and Federated Learning, and Affordable AI and Healthcare for Resource Diverse Global Health, 2022

Physiology-Based Simulation of the Retinal Vasculature Enables Annotation-Free Segmentation of OCT Angiographs.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

Automated Analysis of Diabetic Retinopathy Using Vessel Segmentation Maps as Inductive Bias.
Proceedings of the Mitosis Domain Generalization and Diabetic Retinopathy Analysis, 2022

Structured Knowledge Graphs for Classifying Unseen Patterns in Radiographs.
Proceedings of the Geometric Deep Learning in Medical Image Analysis, 2022

Relationformer: A Unified Framework for Image-to-Graph Generation.
Proceedings of the Computer Vision - ECCV 2022, 2022

Unsupervised Anomaly Localization with Structural Feature-Autoencoders.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2022

FedPIDAvg: A PID Controller Inspired Aggregation Method for Federated Learning.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2022

Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2022

2021
VerSe: A Vertebrae labelling and segmentation benchmark for multi-detector CT images.
Medical Image Anal., 2021

FedCostWAvg: A new averaging for better Federated Learning.
CoRR, 2021

A Deep Learning Approach to Predicting Collateral Flow in Stroke Patients Using Radiomic Features from Perfusion Images.
CoRR, 2021

Semi-Implicit Neural Solver for Time-dependent Partial Differential Equations.
CoRR, 2021

Whole Brain Vessel Graphs: A Dataset and Benchmark for Graph Learning and Neuroscience (VesselGraph).
CoRR, 2021

Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient.
CoRR, 2021

The MICCAI Hackathon on reproducibility, diversity, and selection of papers at the MICCAI conference.
CoRR, 2021

Whole Brain Vessel Graphs: A Dataset and Benchmark for Graph Learning and Neuroscience.
Proceedings of the Neural Information Processing Systems Track on Datasets and Benchmarks 1, 2021

Segmentation of Peripancreatic Arteries in Multispectral Computed Tomography Imaging.
Proceedings of the Machine Learning in Medical Imaging - 12th International Workshop, 2021

Velocity-To-Pressure (V2P) - Net: Inferring Relative Pressures from Time-Varying 3D Fluid Flow Velocities.
Proceedings of the Information Processing in Medical Imaging, 2021

clDice - A Novel Topology-Preserving Loss Function for Tubular Structure Segmentation.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2021

FedCostWAvg: A New Averaging for Better Federated Learning.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2021

Generalized Wasserstein Dice Loss, Test-Time Augmentation, and Transformers for the BraTS 2021 Challenge.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2021

2020
A comparison of automatic multi-tissue segmentation methods of the human fetal brain using the FeTA Dataset.
CoRR, 2020

Real-time Bayesian personalization via a learnable brain tumor growth model.
CoRR, 2020

clDice - a Topology-Preserving Loss Function for Tubular Structure Segmentation.
CoRR, 2020

VerSe: A Vertebrae Labelling and Segmentation Benchmark for Multi-detector CT Images.
CoRR, 2020

Red-GAN: Attacking class imbalance via conditioned generation. Yet another medical imaging perspective.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2020

Aν-Net: Automatic Detection and Segmentation of Aneurysm.
Proceedings of the Cerebral Aneurysm Detection - First Challenge, 2020

A Distance-Based Loss for Smooth and Continuous Skin Layer Segmentation in Optoacoustic Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Inferring the 3D Standing Spine Posture from 2D Radiographs.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

2019
Shape-Aware Complementary-Task Learning for Multi-organ Segmentation.
Proceedings of the Machine Learning in Medical Imaging - 10th International Workshop, 2019

DiamondGAN: Unified Multi-modal Generative Adversarial Networks for MRI Sequences Synthesis.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

A Baseline for Predicting Glioblastoma Patient Survival Time with Classical Statistical Models and Primitive Features Ignoring Image Information.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2019


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