Joel Arrais

Orcid: 0000-0003-4937-2334

According to our database1, Joel Arrais authored at least 74 papers between 2004 and 2024.

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Bibliography

2024
Ensemble-imbalance-based classification for amyotrophic lateral sclerosis prognostic prediction: identifying short-survival patients at diagnosis.
BMC Medical Informatics Decis. Mak., December, 2024

Combining graph neural networks and transformers for few-shot nuclear receptor binding activity prediction.
J. Cheminformatics, December, 2024

TAG-DTA: Binding-region-guided strategy to predict drug-target affinity using transformers.
Expert Syst. Appl., March, 2024

Detecting outliers in case-control cohorts for improving deep learning networks on Schizophrenia prediction.
J. Integr. Bioinform., 2024

A Hybrid GNN Approach for Improved Molecular Property Prediction.
J. Comput. Biol., 2024

Multi-scale cross-attention transformer via graph embeddings for few-shot molecular property prediction.
Appl. Soft Comput., 2024

Predicting drug activity against cancer through genomic profiles and SMILES.
Artif. Intell. Medicine, 2024

2023
Artificial intelligence for prediction of biological activities and generation of molecular hits using stereochemical information.
J. Comput. Aided Mol. Des., December, 2023

Few-shot learning with transformers via graph embeddings for molecular property prediction.
Expert Syst. Appl., September, 2023

FSM-DDTR: End-to-end feedback strategy for multi-objective <i>De Novo</i> drug design using transformers.
Comput. Biol. Medicine, September, 2023

Enhancing reinforcement learning for <i>de novo</i> molecular design applying self-attention mechanisms.
Briefings Bioinform., September, 2023

Few-shot learning via graph embeddings with convolutional networks for low-data molecular property prediction.
Neural Comput. Appl., June, 2023

The Impact of Schizophrenia Misdiagnosis Rates on Machine Learning Models Performance.
Proceedings of the Practical Applications of Computational Biology and Bioinformatics, 2023

On the Quantization of Recurrent Neural Networks for Smiles Generation.
Proceedings of the IEEE International Conference on Acoustics, 2023

Convolutional Transformer via Graph Embeddings for Few-shot Toxicity and Side Effect Prediction.
Proceedings of the 31st European Symposium on Artificial Neural Networks, 2023

2022
Correction to: Designing optimized drug candidates with Generative Adversarial Network.
J. Cheminformatics, 2022

Designing optimized drug candidates with Generative Adversarial Network.
J. Cheminformatics, 2022

Machine Learning Solutions Applied to Amyotrophic Lateral Sclerosis Prognosis: A Review.
Frontiers Comput. Sci., 2022

DTITR: End-to-end drug-target binding affinity prediction with transformers.
Comput. Biol. Medicine, 2022

Explainable deep drug-target representations for binding affinity prediction.
BMC Bioinform., 2022

Deep generative model for therapeutic targets using transcriptomic disease-associated data - USP7 case study.
Briefings Bioinform., 2022

Force-Directed Timelines: Visualizing & Exploring Temporal Patterns.
Big Data Res., 2022

Multivariate Data Exploration Through Coordinated Views.
IEEE Access, 2022

Deep Model for Anticancer Drug Response through Genomic Profiles and Compound Structures.
Proceedings of the 35th IEEE International Symposium on Computer-Based Medical Systems, 2022

2021
Drug-Target Interaction Prediction: End-to-End Deep Learning Approach.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Diversity oriented Deep Reinforcement Learning for targeted molecule generation.
J. Cheminformatics, 2021

Optimizing blood-brain barrier permeation through deep reinforcement learning for de novo drug design.
Bioinform., 2021

Computational Methods for the Identification of Genetic Variants in Complex Diseases.
Proceedings of the Practical Applications of Computational Biology & Bioinformatics, 2021

Improvement on Generative Adversarial Network for Targeted Drug Design.
Proceedings of the 29th European Symposium on Artificial Neural Networks, 2021

Decay Momentum for Improving Federated Learning.
Proceedings of the 29th European Symposium on Artificial Neural Networks, 2021

Multiobjective Reinforcement Learning in Optimized Drug Design.
Proceedings of the 29th European Symposium on Artificial Neural Networks, 2021

Analysing Games for Health through Users' Opinion Mining.
Proceedings of the 34th IEEE International Symposium on Computer-Based Medical Systems, 2021

Optimizing Recurrent Neural Network Architectures for De Novo Drug Design.
Proceedings of the 34th IEEE International Symposium on Computer-Based Medical Systems, 2021

2020
NanoSen-AQM: From Sensors to Users.
Int. J. Online Biomed. Eng., 2020

CroP - Coordinated Panel visualization for biological networks analysis.
Bioinform., 2020

Exploring Time-Series Through Force-Directed Timelines.
Proceedings of the 24th International Conference on Information Visualisation, 2020

End-to-end Deep Reinforcement Learning for Targeted Drug Generation.
Proceedings of the ICCBB 2020: 4th International Conference on Computational Biology and Bioinformatics, Bali Island, Indonesia, 27 December, 2021, 2020

Using a Novel Unbiased Dataset and Deep Learning Architectures to Predict Protein-Protein Interactions.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Exploring a Siamese Neural Network Architecture for One-Shot Drug Discovery.
Proceedings of the 20th IEEE International Conference on Bioinformatics and Bioengineering, 2020

2019
Interactive and coordinated visualization approaches for biological data analysis.
Briefings Bioinform., 2019

Deep Neural Network Architecture for Drug-Target Interaction Prediction.
Proceedings of the Artificial Neural Networks and Machine Learning - ICANN 2019 - 28th International Conference on Artificial Neural Networks, Munich, Germany, September 17-19, 2019, Proceedings, 2019

An Online Platform For Real-Time Air Quality Monitoring.
Proceedings of the 2019 5th Experiment International Conference (exp.at'19), 2019

A Hybrid Application for Real-Time Air Quality Monitoring.
Proceedings of the 2019 5th Experiment International Conference (exp.at'19), 2019

2018
Fighting Fire with Fire: Computational Prediction of Microbial Targets for Bacteriocins.
Proceedings of the Bioinformatics and Biomedical Engineering, 2018

Interactive Network Visualization of Gene Expression Time-Series Data.
Proceedings of the 22nd International Conference Information Visualisation, 2018

2017
Mixed-Integer Programming Model for Profiling Disease Biomarkers from Gene Expression Studies.
Proceedings of the Bioinformatics and Biomedical Engineering, 2017

On the role of aesthetics in genetic algorithms applied to graph drawing.
Proceedings of the Genetic and Evolutionary Computation Conference, 2017

2016
Computational Discovery of Putative Leads for Drug Repositioning through Drug-Target Interaction Prediction.
PLoS Comput. Biol., 2016

Reconstructing the temporal progression of HIV-1 immune response pathways.
Bioinform., 2016

Ensemble-Based Methodology for the Prediction of Drug-Target Interactions.
Proceedings of the 29th IEEE International Symposium on Computer-Based Medical Systems, 2016

Prediction of Cancer using Network Topological Features.
Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016), 2016

2015
Computational methodology for predicting the landscape of the human-microbial interactome region level influence.
J. Bioinform. Comput. Biol., 2015

Uncovering microbial duality within human microbiomes: A novel algorithm for the analysis of host-pathogen interactions.
Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

2014
Computational prediction of the human-microbial oral interactome.
BMC Syst. Biol., 2014

geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification.
BMC Bioinform., 2014

Metagenomic Analysis of the Saliva Microbiome with Merlin.
Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014

2013
Quantitative Characterization of Protein Networks of the Oral Cavity.
Proceedings of the 7th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2013

Representation of Semantic Networks of Biomedical Terms.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2013

Computational Approach to Predict Inter-Species Oral Protein-Protein Interactions.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2013

2012
Web Information System for the Study of Oral Health.
Proceedings of the HEALTHINF 2012 - Proceedings of the International Conference on Health Informatics, Vilamoura, Algarve, Portugal, 1, 2012

Data Integration Solution for Organ-Specific Studies: An Application for Oral Biology.
Proceedings of the Biomedical Engineering Systems and Technologies, 2012

2011
Challenges Storing and Representing Biomedical Data.
Proceedings of the Information Quality in e-Health, 2011

2010
Concept-based query expansion for retrieving gene related publications from MEDLINE.
BMC Bioinform., 2010

GeneBrowser 2: an application to explore and identify common biological traits in a set of genes.
BMC Bioinform., 2010

Expanding Gene-Based PubMed Queries.
Proceedings of the Advances in Bioinformatics, 2010

Improving Cross Mapping in Biomedical Databases.
Proceedings of the Advances in Bioinformatics, 2010

2009
DynamicFlow: A Client-Side Workflow Management System.
Proceedings of the Distributed Computing, 2009

Link Integrator - A Link-based Data Integration Architecture.
Proceedings of the KDIR 2009 - Proceedings of the International Conference on Knowledge Discovery and Information Retrieval, Funchal, 2009

2008
Improving Literature Searches in Gene Expression Studies.
Proceedings of the 2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics, 2008

Dynamic service integration using web-based workflows.
Proceedings of the iiWAS'2008, 2008

A Microarray Information Database.
Proceedings of the International Conference on Biocomputation, 2008

2007
GeneBrowser: an approach for integration and functional classification of genomics data.
J. Integr. Bioinform., 2007

2006
A Prospective Study on the Integration of Microarray Data in HIS/EPR.
Proceedings of the Biological and Medical Data Analysis, 7th International Symposium, 2006

2004
Hardware/Software Implementation of FPGA-Targeted Matrix-Oriented SAT Solvers.
Proceedings of the Field Programmable Logic and Application, 2004


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