Joe Stubbs

According to our database, Joe Stubbs authored at least 40 papers between 2014 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Toward Smart Scheduling in Tapis.

Joe Stubbs, Smruti Padhy, Richard Cardone

CoRR, 2024

A Comprehensive Cloud Architecture for Machine Learning-enabled Research.

Joe Stubbs, Dhanny Indrakusuma, Christian Garcia, François Halbach, Cody Hammock, Nathan Dean Freeman, Anagha Jamthe, Michael Packard, Alexander Fields, Gilbert Curbelo

Proceedings of the Practice and Experience in Advanced Research Computing 2024: Human Powered Computing, 2024

AI and Science Gateways: A Promising Combination for Accelerating Science and Research Computing.

Jeanette M. Sperhac, Sandra Gesing, Michael G. Zentner, Claire Stirm, Rob Quick, Joe Stubbs

Proceedings of the Practice and Experience in Advanced Research Computing 2024: Human Powered Computing, 2024

Introduction to the Minitrack on Software Sustainability: Research on Usability, Maintainability, and Reproducibility Minitrack.

Maytal Dahan, Joe Stubbs, Sandra Gesing

Proceedings of the 57th Hawaii International Conference on System Sciences, 2024

CloudSec: An Extensible Automated Reasoning Framework for Cloud Security Policies.

Joe Stubbs, Smruti Padhy, Richard Cardone, Steve Black

Proceedings of the Second International Conference on Advances in Computing Research, 2024

2023

Scalable Scientific Interactive Research Computing With Project Scinco.

Joe Stubbs, Anagha Jamthe, Nathan Dean Freeman, Mike Packard, Gilbert Curbelo, Cody Hammock

Comput. Sci. Eng., 2023

Development of Authenticated Clients and Applications for ICICLE CI Services - Final Report for the REHS Program, June-August, 2022.

Sahil Samar, Mia Chen, Jack Karpinski, Michael Ray, Archita Sarin, Christian Garcia, Matthew Lange, Joe Stubbs, Mary P. Thomas

CoRR, 2023

An Interactive Knowledge and Learning Environment in Smart Foodsheds.

Yamei Tu, Xiaoqi Wang, Rui Qiu, Han-Wei Shen, Michelle Miller, Jinmeng Rao, Song Gao, Patrick R. Huber, Allan Hollander, Matthew Lange, Christian Garcia, Joe Stubbs

IEEE Computer Graphics and Applications, 2023

Detailed Functional Overview of an API and Workflow Engine for Scientific Research Computing.

Nathan Dean Freeman, Joe Stubbs, Richard Cardone, Christian Garcia

Proceedings of the Practice and Experience in Advanced Research Computing, 2023

Introduction to the Minitrack on Software Sustainability: Strategies for Long-Lasting and Usable Software.

Sandra Gesing, Maytal Dahan, Joe Stubbs

Proceedings of the 56th Hawaii International Conference on System Sciences, 2023

A Decentralized Authorization and Security Framework for Distributed Research Workflows.

Richard Cardone, Smruti Padhy, Steve Black, Joe Stubbs, Sean B. Cleveland

Proceedings of the 47th IEEE Annual Computers, Software, and Applications Conference, 2023

2022

Prediction of whole-cell transcriptional response with machine learning.

Mohammed Eslami, Amin Espah Borujeni, Hamed Eramian, Mark Weston, George Zheng, Joshua Urrutia, Carolyn Corbet, Diveena Becker, Paul Maschhoff, Katie Clowers, Alexander Cristofaro, Hamid Doost Hosseini, D. Benjamin Gordon, Yuval Dorfan, Jedediah Singer, Matthew Vaughn, Niall Gaffney, John Fonner, Joe Stubbs, Christopher A. Voigt, Enoch Yeung

Bioinform., 2022

Extending Tapis Workflow Management Framework with Elastic Google Cloud Distributed System using CloudyCluster by Omnibond.

Eric Lam, Sean B. Cleveland, Richard Cardone, Gwen A. Jacobs, Boyd Wilson, Cole McKnight, Joe Stubbs

Proceedings of the PEARC '22: Practice and Experience in Advanced Research Computing, Boston, MA, USA, July 10, 2022

Workflow management for scientific research computing with Tapis Workflows: Architecture and Design Decisions behind Software for Research Computing Pipelines.

Nathan Dean Freeman, Joe Stubbs, Richard Cardone

Proceedings of the PEARC '22: Practice and Experience in Advanced Research Computing, Boston, MA, USA, July 10, 2022

A Design Pattern for Recoverable Job Management.

Richard Cardone, Joe Stubbs, Steve Black, Christian Garcia, Anagha Jamthe, Mike Packard, Smruti Padhy

Proceedings of the PEARC '22: Practice and Experience in Advanced Research Computing, Boston, MA, USA, July 10, 2022

Introduction to the Minitrack on Software Sustainability: Strategies for Long-Lasting and Usable Research Software.

Maytal Dahan, Sandra Gesing, Joe Stubbs

Proceedings of the 55th Hawaii International Conference on System Sciences, 2022

2021

Tapis v3 Streams API: Time-series and data-driven event support in science gateway infrastructure.

Sean B. Cleveland, Anagha Jamthe, Smruti Padhy, Joe Stubbs, Steven Terry, Julia Looney, Richard Cardone, Michael Packard, Maytal Dahan, Gwen A. Jacobs

Concurr. Comput. Pract. Exp., 2021

Common Resource Descriptions for Interoperable Gateway Cyberinfrastructure.

Joe Stubbs, Suresh Marru, Daniel Mejia, John-Paul Navarro, Eric Franz, Steve Black, Dimuthu Wannipurage, Sudhakar Pamidighantam, Claire Stirm, Maytal Dahan, Marlon E. Pierce, Michael G. Zentner

Proceedings of the PEARC '21: Practice and Experience in Advanced Research Computing, 2021

Building Tapis v3 Streams API Support for Real-Time Streaming Data Event-Driven Workflows.

Smruti Padhy, Anagha Jamthe, Sean B. Cleveland, Jack A. Smith, Joe Stubbs, Christian Garcia, Michael Packard, Steve Terry, Julia Looney, Richard Cardone, Maytal Dahan, Gwen A. Jacobs

Proceedings of the PEARC '21: Practice and Experience in Advanced Research Computing, 2021

Real-World, Self-Hosted Kubernetes Experience.

Michael Packard, Joe Stubbs, Justin A. Drake, Christian Garcia

Proceedings of the PEARC '21: Practice and Experience in Advanced Research Computing, 2021

Designing and Proving Properties of the Abaco Autoscaler Using TLA+.

Smruti Padhy, Joe Stubbs

Proceedings of the Software Verification - 13th International Conference, 2021

Sustainability in the Tapis Framework.

Joe Stubbs, Richard Cardone, Sean B. Cleveland, Gwen A. Jacobs, Michael Packard, Anagha Jamthe, Smruti Padhy, Steve Black, Steve Terry, Julia Looney, Joseph Meiring, Maytal Dahan

Proceedings of the 54th Hawaii International Conference on System Sciences, 2021

Introduction to the Minitrack on Software Survivability: Strategies for Long-Lasting and Usable Research Software.

Maytal Dahan, Joe Stubbs, Sandra Gesing

Proceedings of the 54th Hawaii International Conference on System Sciences, 2021

2020

Toward Interoperable Cyberinfrastructure: Common Descriptions for Computational Resources and Applications.

Joe Stubbs, Suresh Marru, Daniel Mejia, Daniel S. Katz, Kyle Chard, Maytal Dahan, Marlon E. Pierce, Michael G. Zentner

Proceedings of the PEARC '20: Practice and Experience in Advanced Research Computing, 2020

Integrating Jupyter into Research Computing Ecosystems: Challenges and Successes in Architecting JupyterHub for Collaborative Research Computing Ecosystems.

Joe Stubbs, Julia Looney, Marjo Poindexter, Elias Chalhoub, Gregory J. Zynda, Erik S. Ferlanti, Matthew Vaughn, John M. Fonner, Maytal Dahan

Proceedings of the PEARC '20: Practice and Experience in Advanced Research Computing, 2020

Tapis early adopter workshop.

Joe Stubbs, Gwen A. Jacobs, Maytal Dahan, Sean B. Cleveland, Anagha Jamthe, Steve Black, Richard Cardone, Smruti Padhy, Julia Looney, Joseph Meiring, Mike Packard, Steve Terry

Proceedings of the PEARC Companion '20: Practice and Experience in Advanced Research Computing, 2020

Tapis API Development with Python: Best Practices In Scientific REST API Implementation: Experience implementing a distributed Stream API.

Sean B. Cleveland, Anagha Jamthe, Smruti Padhy, Joe Stubbs, Michael Packard, Julia Looney, Steve Terry, Richard Cardone, Maytal Dahan, Gwen A. Jacobs

Proceedings of the PEARC '20: Practice and Experience in Advanced Research Computing, 2020

Lessons Learned from the Chameleon Testbed.

Kate Keahey, Jason Anderson, Zhuo Zhen, Pierre Riteau, Paul Ruth, Dan Stanzione, Mert Cevik, Jacob Colleran, Haryadi S. Gunawi, Cody Hammock, Joe Mambretti, Alexander Barnes, François Halbach, Alex Rocha, Joe Stubbs

Proceedings of the 2020 USENIX Annual Technical Conference, 2020

2019

GenApp, Containers and Abaco: Technical Paper.

Emre H. Brookes, Joe Stubbs

Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning), 2019

SSH-Backed API Performance Case Study.

Anagha Jamthe, Mike Packard, Joe Stubbs, Gilbert Curbelo, Roseline Shapi, Elias Chalhoub

Proceedings of the Benchmarking, Measuring, and Optimizing, 2019

2018

Virtualizing the Stampede2 Supercomputer with Applications to HPC in the Cloud.

W. Cyrus Proctor, Mike Packard, Anagha Jamthe, Richard Cardone, Joseph Stubbs

Proceedings of the Practice and Experience on Advanced Research Computing, 2018

Building Science Gateway Infrastructure in the Middle of the Pacific and Beyond: Experiences using the Agave Deployer and Agave Platform to Build Science Gateways.

Sean B. Cleveland, Rion Dooley, David Perry, Joe Stubbs, John M. Fonner, Gwen A. Jacobs

Proceedings of the Practice and Experience on Advanced Research Computing, 2018

Rapid Development of Scalable, Distributed Computation with Abaco.

Joe Stubbs, Matthew Vaughn, Julia Looney

Proceedings of the 10th International Workshop on Science Gateways, 2018

2016

Endofday: A Container Workflow Engine for Scalable, Reproducible Computation.

Joe Stubbs, Stephen Talley, Walter Moreira, Rion Dooley, Ann Stapleton

Proceedings of the 8th International Workshop on Science Gateways, 2016

2015

Araport: the Arabidopsis Information Portal.

Vivek Krishnakumar, Matthew R. Hanlon, Sergio Contrino, Erik S. Ferlanti, Svetlana Karamycheva, Maria Kim, Benjamin D. Rosen, Chia-Yi Cheng, Walter Moreira, Stephen A. Mock, Joseph Stubbs, Julie M. Sullivan, Konstantinos Krampis, Jason R. Miller, Gos Micklem, Matthew Vaughn, Christopher D. Town

Nucleic Acids Res., 2015

Araport: an application platform for data discovery.

Matthew R. Hanlon, Matthew Vaughn, Stephen A. Mock, Rion Dooley, Walter Moreira, Joe Stubbs, Christopher Town, Jason R. Miller, Vivek Krishnakumar, Erik S. Ferlanti, Eleanor Pence

Concurr. Comput. Pract. Exp., 2015

2014

Dynamically Provisioning Portable Gateway Infrastructure Using Docker and Agave.

Rion Dooley, Joe Stubbs

Proceedings of the Annual Conference of the Extreme Science and Engineering Discovery Environment, 2014

Integrating Science Gateways with XSEDE Security: A Survey of Credential Management Approaches.

Jim Basney, Jeff Gaynor, Suresh Marru, Marlon E. Pierce, Thejaka Amila Kanewala, Rion Dooley, Joe Stubbs

Proceedings of the Annual Conference of the Extreme Science and Engineering Discovery Environment, 2014

The arabidopsis information portal: an application platform for data discovery.

Matthew R. Hanlon, Matthew Vaughn, Stephen A. Mock, Rion Dooley, Walter Moreira, Joe Stubbs, Christopher Town, Jason R. Miller, Vivek Krishnakumar, Erik S. Ferlanti, Eleanor Pence

Proceedings of the 9th Gateway Computing Environments Workshop, 2014

The MyProxy Gateway.

Rion Dooley, Joe Stubbs, Jim Basney

Proceedings of the 6th International Workshop on Science Gateways, 2014