João F. Matias Rodrigues

According to our database, João F. Matias Rodrigues authored at least 9 papers between 2009 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes.

Anthony Fullam, Ivica Letunic, Thomas S. B. Schmidt, Quinten R. Ducarmon, Nicolai Karcher, Supriya Khedkar, Michael Kuhn, Martin Larralde, Oleksandr M. Maistrenko, Lukas Malfertheiner, Alessio Milanese, João F. Matias Rodrigues, Claudia Sanchis-López, Christian Schudoma, Damian Szklarczyk, Shinichi Sunagawa, Georg Zeller, Jaime Huerta-Cepas, Christian von Mering, Peer Bork, Daniel R. Mende

Nucleic Acids Res., January, 2023

2022

Systematic assessment of pathway databases, based on a diverse collection of user-submitted experiments.

Annika L. Gable, Damian Szklarczyk, David Lyon, João F. Matias Rodrigues, Christian von Mering

Briefings Bioinform., 2022

2017

MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis.

João F. Matias Rodrigues, Thomas S. B. Schmidt, Janko Tackmann, Christian von Mering

Bioinform., 2017

2014

Ecological Consistency of SSU rRNA-Based Operational Taxonomic Units at a Global Scale.

Thomas S. B. Schmidt, João F. Matias Rodrigues, Christian von Mering

PLoS Comput. Biol., 2014

HPC-CLUST: distributed hierarchical clustering for large sets of nucleotide sequences.

João F. Matias Rodrigues, Christian von Mering

Bioinform., 2014

2012

Differences in Cell Division Rates Drive the Evolution of Terminal Differentiation in Microbes.

João F. Matias Rodrigues, Daniel J. Rankin, Valentina Rossetti, Andreas Wagner, Homayoun C. Bagheri

PLoS Comput. Biol., 2012

2011

Genotype networks, innovation, and robustness in sulfur metabolism.

João F. Matias Rodrigues, Andreas Wagner

BMC Syst. Biol., 2011

2010

Genotype networks in metabolic reaction spaces.

Areejit Samal, João F. Matias Rodrigues, Jürgen Jost, Olivier C. Martin, Andreas Wagner

BMC Syst. Biol., 2010

2009

Evolutionary Plasticity and Innovations in Complex Metabolic Reaction Networks.

João F. Matias Rodrigues, Andreas Wagner

PLoS Comput. Biol., 2009