Joanna Trylska

Orcid: 0000-0002-1464-5323

According to our database1, Joanna Trylska authored at least 13 papers between 2006 and 2023.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of five.

Timeline

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Bibliography

2023
Varying molecular interactions explain aspects of crowder-dependent enzyme function of a viral protease.
PLoS Comput. Biol., 2023

2021
Correction: Extracellular loops of BtuB facilitate transport of vitamin B12 through the outer membrane of E. coli.
PLoS Comput. Biol., 2021

2020
Extracellular loops of BtuB facilitate transport of vitamin B12 through the outer membrane of E. coli.
PLoS Comput. Biol., 2020

2019
Computational Methods Used to Explore Transport Events in Biological Systems.
J. Chem. Inf. Model., 2019

2016
Structural and energetic comparison of the complexes of aminoglycosides with the model of the ribosomal A-site.
RAIRO Oper. Res., 2016

2011
Understanding the Origins of Bacterial Resistance to Aminoglycosides through Molecular Dynamics Mutational Study of the Ribosomal A-Site.
PLoS Comput. Biol., 2011

Brownian dynamics simulations on CPU and GPU with BD_BOX.
J. Comput. Chem., 2011

Genetic Algorithm Optimization of Force Field Parameters: Application to a Coarse-Grained Model of RNA.
Proceedings of the Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, 2011

2009
Search for Novel Aminoglycosides by Combining Fragment-Based Virtual Screening and 3D-QSAR Scoring.
J. Chem. Inf. Model., 2009

RedMD - Reduced molecular dynamics package.
J. Comput. Chem., 2009

2008
Coarse-grained force field for the nucleosome from self-consistent multiscaling.
J. Comput. Chem., 2008

The Poisson-Boltzmann model for tRNA: Assessment of the calculation set-up and ionic concentration cutoff.
J. Comput. Chem., 2008

2006
Dependency Map of Proteins in the Small Ribosomal Subunit.
PLoS Comput. Biol., 2006


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