Joan Segura

According to our database, Joan Segura authored at least 20 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

RCSB Protein Data Bank: visualizing groups of experimentally determined PDB structures alongside computed structure models of proteins.

Joan Segura, Yana Rose, Chunxiao Bi, Jose M. Duarte, Stephen K. Burley, Sebastian Bittrich

Frontiers Bioinform., May, 2023

RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning.

Stephen K. Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Henry Chao, Li Chen, Paul A. Craig, Gregg V. Crichlow, Kenneth Dalenberg, Jose M. Duarte, Shuchismita Dutta, Maryam Fayazi, Zukang Feng, Justin W. Flatt, Sai Ganesan, Sutapa Ghosh, David S. Goodsell, Rachel Kramer Green, Vladimir Guranovic, Jeremy Henry, Brian P. Hudson, Igor Khokhriakov, Catherine L. Lawson, Yuhe Liang, Robert Lowe, Ezra Peisach, Irina Persikova, Dennis W. Piehl, Yana Rose, Andrej Sali, Joan Segura, Monica Sekharan, Chenghua Shao, Brinda Vallat, Maria Voigt, Ben M. Webb, John D. Westbrook, Shamara Whetstone, Jasmine Young, Arthur O. Zalevsky, Christine Zardecki

Nucleic Acids Res., January, 2023

2022

RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies.

Joan Segura, Yana Rose, Sebastian Bittrich, Stephen K. Burley, Jose M. Duarte

Bioinform., 2022

RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB.

Sebastian Bittrich, Yana Rose, Joan Segura, Robert Lowe, John D. Westbrook, Jose M. Duarte, Stephen K. Burley

Bioinform., 2022

2021

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.

Stephen K. Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Li Chen, Gregg V. Crichlow, Cole H. Christie, Kenneth Dalenberg, Luigi Di Costanzo, Jose M. Duarte, Shuchismita Dutta, Zukang Feng, Sai Ganesan, David S. Goodsell, Sutapa Ghosh, Rachel Kramer Green, Vladimir Guranovic, Dmytro Guzenko, Brian P. Hudson, Catherine L. Lawson, Yuhe Liang, Robert Lowe, Harry Namkoong, Ezra Peisach, Irina Persikova, Christopher Randle, Alexander S. Rose, Yana Rose, Andrej Sali, Joan Segura, Monica Sekharan, Chenghua Shao, Yi-Ping Tao, Maria Voigt, John D. Westbrook, Jasmine Young, Christine Zardecki, Marina Zhuravleva

Nucleic Acids Res., 2021

RCSB Protein Data Bank 1D tools and services.

Joan Segura, Yana Rose, John D. Westbrook, Stephen K. Burley, Jose M. Duarte

Bioinform., 2021

2019

3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations.

Joan Segura, Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo

Bioinform., 2019

Validation of electron microscopy initial models via small angle X-ray scattering curves.

Amaya Jiménez, Slavica Jonic, Tomás Majtner, Joaquín Otón, Jose Luis Vilas, David Maluenda, Javier Mota, Erney Ramírez-Aportela, Marta Martínez, Yaiza Rancel, Joan Segura, Rubén Sánchez García, Roberto Melero, Laura del Cano, Pablo Conesa, Lars Skjaerven, Roberto Marabini, José María Carazo, Carlos Oscar Sánchez Sorzano

Bioinform., 2019

BIPSPI: a method for the prediction of partner-specific protein-protein interfaces.

Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo, Joan Segura

Bioinform., 2019

2017

3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures.

Joan Segura, Rubén Sánchez García, Marta Martínez, Jesús Cuenca Alba, Daniel Tabas-Madrid, Carlos Oscar Sánchez Sorzano, José María Carazo

Bioinform., 2017

2015

Using neighborhood cohesiveness to infer interactions between protein domains.

Joan Segura, Carlos Oscar Sánchez Sorzano, Jesús Cuenca Alba, Patrick Aloy, José María Carazo

Bioinform., 2015

2014

Frag'r'Us: knowledge-based sampling of protein backbone conformations for <i>de novo</i> structure-based protein design.

Jaume Bonet, Joan Segura, Joan Planas-Iglesias, Baldomero Oliva, Narcis Fernandez-Fuentes

Bioinform., 2014

2012

CAPS-<i>DB</i>: a structural classification of helix-capping motifs.

Joan Segura, Baldomero Oliva, Narcis Fernandez-Fuentes

Nucleic Acids Res., 2012

A holistic <i>in silico</i> approach to predict functional sites in protein structures.

Joan Segura, Pamela F. Jones, Narcis Fernandez-Fuentes

Bioinform., 2012

Integrating human and murine anatomical gene expression data for improved comparisons.

Natalia Jiménez-Lozano, Joan Segura, José Ramón Macías, Juanjo Vega, José María Carazo

Bioinform., 2012

2011

PCRPi<i>-</i>DB: a database of computationally annotated hot spots in protein interfaces.

Joan Segura, Narcis Fernandez-Fuentes

Nucleic Acids Res., 2011

Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi Diagrams.

Joan Segura, Pamela F. Jones, Narcis Fernandez-Fuentes

BMC Bioinform., 2011

2009

Flexible structural protein alignment by a sequence of local transformations.

Jairo Rocha, Joan Segura, Richard C. Wilson, Swagata Dasgupta

Bioinform., 2009

aGEM: an integrative system for analyzing spatial-temporal gene-expression information.

Natalia Jiménez-Lozano, Joan Segura, José Ramón Macías, Juanjo Vega, José María Carazo

Bioinform., 2009

2006

Compression ratios based on the Universal Similarity Metric still yield protein distances far from CATH distances

Jairo Rocha, Francesc Rosselló, Joan Segura

CoRR, 2006