Joachim Selbig

Affiliations:
  • University of Potsdam, Department of Bioinformatics, Germany
  • Max Planck Institute of Molecular Plant Physiology (MPIMP), Potsdam, Germany


According to our database1, Joachim Selbig authored at least 54 papers between 1981 and 2016.

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Bibliography

2016
Phenomic prediction of maize hybrids.
Biosyst., 2016

2015
Refined elasticity sampling for Monte Carlo-based identification of stabilizing network patterns.
Bioinform., 2015

Towards a Graph-Theoretic Approach to Hybrid Performance Prediction from Large-Scale Phenotypic Data.
Proceedings of the Information Processing in Cells and Tissues, 2015

2014
Biological Cluster Evaluation for Gene Function Prediction.
J. Comput. Biol., 2014

2013
Analysis of phylogenetic signal in protostomial intron patterns using Mutual Information.
Theory Biosci., 2013

2012
A distinct metabolic signature predicts development of fasting plasma glucose.
J. Clin. Bioinform., 2012

F2C2: a fast tool for the computation of flux coupling in genome-scale metabolic networks.
BMC Bioinform., 2012

Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks.
Bioinform., 2012

A MATLAB toolbox for structural kinetic modeling.
Bioinform., 2012

Tailored Strategies for the Analysis of Metabolomic Data.
Proceedings of the Information Processign in Cells and Tissues, 2012

2011
Complexity of automated gene annotation.
Biosyst., 2011

Robustness of metabolic networks: A review of existing definitions.
Biosyst., 2011

Comparison of metabolite profiles in U87 glioma cells and mesenchymal stem cells.
Biosyst., 2011

Spatiotemporal dynamics of the Calvin cycle: Multistationarity and symmetry breaking instabilities.
Biosyst., 2011

Mass-balanced randomization of metabolic networks.
Bioinform., 2011

2010
ExPlanes: Exploring Planes in Triplet Data.
J. Integr. Bioinform., 2010

Biomarker discovery in heterogeneous tissue samples -taking the in-silico deconfounding approach.
BMC Bioinform., 2010

2009
Network Structure and Biological Function: Reconstruction, Modeling, and Statistical Approaches.
EURASIP J. Bioinform. Syst. Biol., 2009

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins.
BMC Bioinform., 2009

HIV-1 Drug Resistance Prediction and Therapy Optimization: A Case Study for the Application of Classification and Clustering Methods.
Proceedings of the Similarity-Based Clustering, 2009

2008
<i>PhosPhAt</i>: a database of phosphorylation sites in <i>Arabidopsis thaliana</i> and a plant-specific phosphorylation site predictor.
Nucleic Acids Res., 2008

Modeling Biological Networks by Action Languages via Answer Set Programming.
Constraints An Int. J., 2008

Hardness and Approximability of the Inverse Scope Problem.
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

2007
Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana.
BMC Bioinform., 2007

ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites.
BMC Bioinform., 2007

From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle.
Bioinform., 2007

pcaMethods - a bioconductor package providing PCA methods for incomplete data.
Bioinform., 2007

2006
Metabolite profiles as a reflection of physiological status -- a methodological validation.
J. Integr. Bioinform., 2006

Validation and functional annotation of expression-based clusters based on gene ontology.
BMC Bioinform., 2006

Modelling Biological Networks by Action Languages Via Answer Set Programming.
Proceedings of the Logic Programming, 22nd International Conference, 2006

Unsupervised Decision Trees Structured by Gene Ontology (GO-UDTs) for the Interpretation of Microarray Data.
Proceedings of the Advances in Data Analysis, 2006

Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV.
Proceedings of the Data Integration in the Life Sciences, Third International Workshop, 2006

2005
Learning Multiple Evolutionary Pathways from Cross-Sectional Data.
J. Comput. Biol., 2005

Species-specific analysis of protein sequence motifs using mutual information.
BMC Bioinform., 2005

Non-linear PCA: a missing data approach.
Bioinform., 2005

Computational methods for the design of effective therapies against drug resistant HIV strains.
Bioinform., 2005

Mtreemix: a software package for learning and using mixture models of mutagenetic trees.
Bioinform., 2005

2004
Estimating mutual information using B-spline functions - an improved similarity measure for analysing gene expression data.
BMC Bioinform., 2004

Hypothesis-driven approach to predict transcriptional units from gene expression data.
Bioinform., 2004

Metabolite fingerprinting: detecting biological features by independent component analysis.
Bioinform., 2004

PaVESy: Pathway Visualization and Editing System.
Bioinform., 2004

Threshold extraction in metabolite concentration data.
Bioinform., 2004

Independent components analysis of starch deficient <i>pgm</i> mutants.
Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, 2004

2003
Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes.
Nucleic Acids Res., 2003

MetaGeneAlyse: analysis of integrated transcriptional and metabolite data.
Bioinform., 2003

Methods for optimizing antiviral combination therapies.
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

2002
Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype.
Proc. Natl. Acad. Sci. USA, 2002

The mutual information: Detecting and evaluating dependencies between variables.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

2001
Geno2pheno: Interpreting Genotypic HIV Drug Resistance Tests.
IEEE Intell. Syst., 2001

Identifying drug resistance-associated patterns in HIV genotypes.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

1999
Decision tree-based formation of consensus protein secondary structure prediction.
Bioinform., 1999

1988
Zum automatischen Erlernen von Beschreibungen für Klassen von Veränderungen strukturierter Objekte aus Beispielen.
PhD thesis, 1988

1986
Knowledge Acquisition by Inductive Learning from Examples.
Proceedings of the Analogical and Inductive Inference, 1986

1981
Concept Learning by Structured Examples - An Algebraic Approach.
Proceedings of the 7th International Joint Conference on Artificial Intelligence, 1981


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