Jo Vandesompele

According to our database, Jo Vandesompele authored at least 20 papers between 2001 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

CIRCprimerXL: Convenient and High-Throughput PCR Primer Design for Circular RNA Quantification.

Marieke Vromman, Jasper Anckaert, Jo Vandesompele, Pieter-Jan Volders

Frontiers Bioinform., 2022

CiLiQuant: Quantification of RNA Junction Reads Based on Their Circular or Linear Transcript Origin.

Annelien Morlion, Eva Hulstaert, Marieke Vromman, Jasper Anckaert, Celine Everaert, Jo Vandesompele, Pieter Mestdagh

Frontiers Bioinform., 2022

2021

Closing the circle: current state and perspectives of circular RNA databases.

Marieke Vromman, Jo Vandesompele, Pieter-Jan Volders

Briefings Bioinform., 2021

2020

SPsimSeq: semi-parametric simulation of bulk and single-cell RNA-sequencing data.

Alemu Takele Assefa, Jo Vandesompele, Olivier Thas

Bioinform., 2020

2019

LNCipedia 5: towards a reference set of human long non-coding RNAs.

Pieter-Jan Volders, Jasper Anckaert, Kenneth Verheggen, Justine Nuytens, Lennart Martens, Pieter Mestdagh, Jo Vandesompele

Nucleic Acids Res., 2019

2018

Computational deconvolution of transcriptomics data from mixed cell populations.

Francisco Avila Cobos, Jo Vandesompele, Pieter Mestdagh, Katleen De Preter

Bioinform., 2018

2017

High-throughput PCR assay design for targeted resequencing using primerXL.

Steve Lefever, Filip Pattyn, Bram De Wilde, Frauke Coppieters, Sarah De Keulenaer, Jan Hellemans, Jo Vandesompele

BMC Bioinform., 2017

Zipper plot: visualizing transcriptional activity of genomic regions.

Francisco Avila Cobos, Jasper Anckaert, Pieter-Jan Volders, Celine Everaert, Dries Rombaut, Jo Vandesompele, Katleen De Preter, Pieter Mestdagh

BMC Bioinform., 2017

decodeRNA - predicting non-coding RNA functions using guilt-by-association.

Steve Lefever, Jasper Anckaert, Pieter-Jan Volders, Manuel Luypaert, Jo Vandesompele, Pieter Mestdagh

Database J. Biol. Databases Curation, 2017

2015

An update on LNCipedia: a database for annotated human lncRNA sequences.

Pieter-Jan Volders, Kenneth Verheggen, Gerben Menschaert, Klaas Vandepoele, Lennart Martens, Jo Vandesompele, Pieter Mestdagh

Nucleic Acids Res., 2015

RDML-Ninja and RDMLdb for standardized exchange of qPCR data.

Jan Ruijter, Steve Lefever, Jasper Anckaert, Jan Hellemans, Michael W. Pfaffl, Vladimir Benes, Stephen Bustin, Jo Vandesompele, Andreas Untergasser

BMC Bioinform., 2015

2014

miRBase Tracker: keeping track of microRNA annotation changes.

Gert Van Peer, Steve Lefever, Jasper Anckaert, Anneleen Beckers, Ali Rihani, Alan Van Goethem, Pieter-Jan Volders, Fjoralba Zeka, Maté Ongenaert, Pieter Mestdagh, Jo Vandesompele

Database J. Biol. Databases Curation, 2014

2013

LNCipedia: a database for annotated human lncRNA transcript sequences and structures.

Pieter-Jan Volders, Kenny Helsens, Xiaowei Wang, Björn Menten, Lennart Martens, Kris Gevaert, Jo Vandesompele, Pieter Mestdagh

Nucleic Acids Res., 2013

2010

Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline.

Joachim M. De Schrijver, Kim De Leeneer, Steve Lefever, Nick Sabbe, Filip Pattyn, Filip Van Nieuwerburgh, Paul Coucke, Dieter Deforce, Jo Vandesompele, Sofie Bekaert, Jan Hellemans, Wim Van Criekinge

BMC Bioinform., 2010

2009

RTPrimerDB: the portal for real-time PCR primers and probes.

Steve Lefever, Jo Vandesompele, Frank Speleman, Filip Pattyn

Nucleic Acids Res., 2009

2006

RTPrimerDB: the real-time PCR primer and probe database, major update 2006.

Filip Pattyn, Piet Robbrecht, Anne De Paepe, Frank Speleman, Jo Vandesompele

Nucleic Acids Res., 2006

methBLAST and methPrimerDB: web-tools for PCR based methylation analysis.

Filip Pattyn, Jasmien Hoebeeck, Piet Robbrecht, Evi Michels, Anne De Paepe, Guy Bottu, David Coornaert, Robert Herzog, Frank Speleman, Jo Vandesompele

BMC Bioinform., 2006

2005

arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays.

Björn Menten, Filip Pattyn, Katleen De Preter, Piet Robbrecht, Evi Michels, Karen Buysse, Geert Mortier, Anne De Paepe, Steven Van Vooren, Joris Robert Vermeesch, Yves Moreau, Bart De Moor, Stefan Vermeulen, Frank Speleman, Jo Vandesompele

BMC Bioinform., 2005

2003

RTPrimerDB: the Real-Time PCR primer and probe database.

Filip Pattyn, Frank Speleman, Anne De Paepe, Jo Vandesompele

Nucleic Acids Res., 2003

2001

Quantification of splice variants using real-time PCR.

Ina I. Vandenbroucke, Jo Vandesompele, Anne De Paepe, Ludwine Messiaen

Nucleic Acids Res., 2001