Jingcheng Du

According to our database, Jingcheng Du authored at least 63 papers between 2014 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

AutoCriteria: a generalizable clinical trial eligibility criteria extraction system powered by large language models.

Surabhi Datta, Kyeryoung Lee, Hunki Paek, Frank J. Manion, Nneka Ofoegbu, Jingcheng Du, Ying Li, Liang-Chin Huang, Jingqi Wang, Bin Lin, Hua Xu, Xiaoyan Wang

J. Am. Medical Informatics Assoc., January, 2024

Improving large language models for clinical named entity recognition via prompt engineering.

Yan Hu, Qingyu Chen, Jingcheng Du, Xueqing Peng, Vipina Kuttichi Keloth, Xu Zuo, Yujia Zhou, Zehan Li, Xiaoqian Jiang, Zhiyong Lu, Kirk Roberts, Hua Xu

J. Am. Medical Informatics Assoc., 2024

2023

SHAPE: A Sample-Adaptive Hierarchical Prediction Network for Medication Recommendation.

Sicen Liu, Xiaolong Wang, Jingcheng Du, Yongshuai Hou, Xianbing Zhao, Hui Xu, Hui Wang, Yang Xiang, Buzhou Tang

IEEE J. Biomed. Health Informatics, December, 2023

Machine learning-based donor permission extraction from informed consent documents.

Meng Zhang, Madhuri Sankaranarayanapillai, Jingcheng Du, Yang Xiang, Frank J. Manion, Marcelline R. Harris, Cooper Stansbury, Huy Anh Pham, Cui Tao

BMC Bioinform., December, 2023

Systematic design and data-driven evaluation of social determinants of health ontology (SDoHO).

Yifang Dang, Fang Li, Xinyue Hu, Vipina Kuttichi Keloth, Meng Zhang, Sunyang Fu, Muhammad F. Amith, J. Wilfred Fan, Jingcheng Du, Evan Yu, Hongfang Liu, Xiaoqian Jiang, Hua Xu, Cui Tao

J. Am. Medical Informatics Assoc., August, 2023

Large language models in biomedical natural language processing: benchmarks, baselines, and recommendations.

Qingyu Chen, Jingcheng Du, Yan Hu, Vipina Kuttichi Keloth, Xueqing Peng, Kalpana Raja, Rui Zhang, Zhiyong Lu, Hua Xu

CoRR, 2023

2022

LitMC-BERT: Transformer-Based Multi-Label Classification of Biomedical Literature With An Application on COVID-19 Literature Curation.

Qingyu Chen, Jingcheng Du, Alexis Allot, Zhiyong Lu

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Systematic Design and Evaluation of Social Determinants of Health Ontology (SDoHO).

Yifang Dang, Fang Li, Xinyue Hu, Vipina Kuttichi Keloth, Meng Zhang, Sunyang Fu, Jingcheng Du, J. Wilfred Fan, Muhammad F. Amith, Evan Yu, Hongfang Liu, Xiaoqian Jiang, Hua Xu, Cui Tao

CoRR, 2022

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.

Qingyu Chen, Alexis Allot, Robert Leaman, Rezarta Islamaj Dogan, Jingcheng Du, Li Fang, Wang Kai, Shuo Xu, Yuefu Zhang, Parsa Bagherzadeh, Sabine Bergler, Aakash Bhatnagar, Nidhir Bhavsar, Yung-Chun Chang, Sheng-Jie Lin, Wentai Tang, Hongtong Zhang, Ilija Tavchioski, Shubo Tian, Jinfeng Zhang, Yulia Otmakhova, Antonio Jimeno-Yepes, Hang Dong, Honghan Wu, Richard Dufour, Yanis Labrak, Niladri Chatterjee, Kushagri Tandon, Fréjus A. A. Laleye, Loïc Rakotoson, Emmanuele Chersoni, Jinghang Gu, Annemarie Friedrich, Subhash Chandra Pujari, Mariia Chizhikova, Naveen Sivadasan, Zhiyong Lu

CoRR, 2022

Mining On Alzheimer's Diseases Related Knowledge Graph to Identity Potential AD-related Semantic Triples for Drug Repurposing.

Yi Nian, Xinyue Hu, Rui Zhang, Jingna Feng, Jingcheng Du, Fang Li, Yong Chen, Cui Tao

CoRR, 2022

Mining on Alzheimer's diseases related knowledge graph to identity potential AD-related semantic triples for drug repurposing.

Yi Nian, Xinyue Hu, Rui Zhang, Jingna Feng, Jingcheng Du, Fang Li, Larry Bu, Yuji Zhang, Yong Chen, Cui Tao

BMC Bioinform., 2022

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.

Qingyu Chen, Alexis Allot, Robert Leaman, Rezarta Islamaj, Jingcheng Du, Li Fang, Wang Kai, Shuo Xu, Yuefu Zhang, Parsa Bagherzadeh, Sabine Bergler, Aakash Bhatnagar, Nidhir Bhavsar, Yung-Chun Chang, Sheng-Jie Lin, Wentai Tang, Hongtong Zhang, Ilija Tavchioski, Senja Pollak, Shubo Tian, Jinfeng Zhang, Yulia Otmakhova, Antonio Jimeno-Yepes, Hang Dong, Honghan Wu, Richard Dufour, Yanis Labrak, Niladri Chatterjee, Kushagri Tandon, Fréjus A. A. Laleye, Loïc Rakotoson, Emmanuele Chersoni, Jinghang Gu, Annemarie Friedrich, Subhash Chandra Pujari, Mariia Chizhikova, Naveen Sivadasan, Saipradeep Vg, Zhiyong Lu

Database J. Biol. Databases Curation, 2022

LANN: an Integrated Online Annotation Tool for Information Extraction.

Jingqi Wang, Yaoyun Zhang, Bin Lin, Huy Anh Pham, Long He, Jingcheng Du, Frank J. Manion

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

IMI-CDE: an interactive interface for collaborative mapping of study variables to common data elements.

Shiqiang Tao, Wei-Chun Chou, Jianfu Li, Jingcheng Du, Pritham Ram, Rashmie Abeysinghe, Hua Xu, Xiaoqian Jiang, Peter W. Rose, Lucila Ohno-Machado, Guo-Qiang Zhang

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

Combining Transfer Learning with Graph Attention Models for HIV Risk Prediction.

Evan Yu, Cui Tao, Jingcheng Du, Degui Zhi, Yang Xiang, Kayo Fujimoto, Xi Luo, John A. Schneider

Proceedings of the AMIA 2022, 2022

2021

Deep representation learning of patient data from Electronic Health Records (EHR): A systematic review.

Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts

J. Biomed. Informatics, 2021

COVID-19 trial graph: a linked graph for COVID-19 clinical trials.

Jingcheng Du, Qing Wang, Jingqi Wang, Prerana Ramesh, Yang Xiang, Xiaoqian Jiang, Cui Tao

J. Am. Medical Informatics Assoc., 2021

Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning.

Jingcheng Du, Yang Xiang, Madhuri Sankaranarayanapillai, Meng Zhang, Jingqi Wang, Yuqi Si, Huy Anh Pham, Hua Xu, Yong Chen, Cui Tao

J. Am. Medical Informatics Assoc., 2021

Knowledge Graph-based Neurodegenerative Diseases and Diet Relationship Discovery.

Yi Nian, Jingcheng Du, Larry Bu, Fang Li, Xinyue Hu, Yuji Zhang, Cui Tao

CoRR, 2021

Understanding Public Perceptions of Measles from Twitter Using Multi-Task Convolutional Neural Networks.

Samuel Wang, Jingcheng Du, Lu Tang, Cui Tao

Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021

Data and Model Biases in Social Media Analyses: A Case Study of COVID-19 Tweets.

Yunpeng Zhao, Pengfei Yin, Yongqiu Li, Xing He, Jingcheng Du, Cui Tao, Yi Guo, Mattia Prosperi, Pierangelo Veltri, Xi Yang, Yonghui Wu, Jiang Bian

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

AM2BERT: attention guided and regularized transformer-based multi-label classification model for COVID-19 literature curation.

Qingyu Chen, Jingcheng Du, Alexis Allot, Zhiyong Lu

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Deep learning with sentence embeddings pre-trained on biomedical corpora improves the performance of finding similar sentences in electronic medical records.

Qingyu Chen, Jingcheng Du, Sun Kim, W. John Wilbur, Zhiyong Lu

BMC Medical Informatics Decis. Mak., April, 2020

Deep learning in clinical natural language processing: a methodical review.

Stephen Wu, Kirk Roberts, Surabhi Datta, Jingcheng Du, Zongcheng Ji, Yuqi Si, Sarvesh Soni, Qiong Wang, Qiang Wei, Yang Xiang, Bo Zhao, Hua Xu

J. Am. Medical Informatics Assoc., 2020

A study of deep learning approaches for medication and adverse drug event extraction from clinical text.

Qiang Wei, Zongcheng Ji, Zhiheng Li, Jingcheng Du, Jingqi Wang, Jun Xu, Yang Xiang, Firat Tiryaki, Stephen Wu, Yaoyun Zhang, Cui Tao, Hua Xu

J. Am. Medical Informatics Assoc., 2020

Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events.

Fang Li, Jingcheng Du, Yongqun He, Hsing-yi Song, Mohcine Madkour, Guozheng Rao, Yang Xiang, Yi Luo, Henry W. Chen, Sijia Liu, Liwei Wang, Hongfang Liu, Hua Xu, Cui Tao

J. Am. Medical Informatics Assoc., 2020

Exploring temporal suicidal behavior patterns on social media: Insight from Twitter analytics.

Jianhong Luo, Jingcheng Du, Cui Tao, Hua Xu, Yaoyun Zhang

Health Informatics J., 2020

Ontological representation-oriented term normalization and standardization of the Research Domain Criteria.

Fang Li, Guozheng Rao, Jingcheng Du, Yang Xiang, Yaoyun Zhang, Salih Selek, Jane Elizabeth Hamilton, Hua Xu, Cui Tao

Health Informatics J., 2020

On the evidence consistency of pharmacovigilance outcomes between Food and Drug Administration Adverse Event Reporting System and electronic medical record data for acute mania patients.

Rui Duan, Xinyuan Zhang, Jingcheng Du, Jing Huang, Cui Tao, Yong Chen

Health Informatics J., 2020

Deep Representation Learning of Patient Data from Electronic Health Records: A Systematic Review.

Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts

Proceedings of the AMIA 2020, 2020

2019

Leveraging deep learning to understand health beliefs about the Human Papillomavirus Vaccine from social media.

Jingcheng Du, Rachel Cunningham, Yang Xiang, Fang Li, Yuxi Jia, Julie A. Boom, Sahiti Myneni, Jiang Bian, Chongliang Luo, Yong Chen, Cui Tao

npj Digit. Medicine, 2019

Comparing drug safety of hepatitis C therapies using post-market data.

Jing Huang, Xinyuan Zhang, Jiayi Tong, Jingcheng Du, Rui Duan, Liu Yang, Jason H. Moore, Cui Tao, Yong Chen

BMC Medical Informatics Decis. Mak., 2019

ML-Net: multi-label classification of biomedical texts with deep neural networks.

Jingcheng Du, Qingyu Chen, Yifan Peng, Yang Xiang, Cui Tao, Zhiyong Lu

J. Am. Medical Informatics Assoc., 2019

Exploring difference in public perceptions on HPV vaccine between gender groups from Twitter using deep learning.

Jingcheng Du, Chongliang Luo, Qiang Wei, Yong Chen, Cui Tao

CoRR, 2019

Text Mining and Machine Learning for Precision Medicine.

Graciela Gonzalez, Zhiyong Lu, Robert Leaman, Davy Weissenbacher, Mary Regina Boland, Yong Chen, Jingcheng Du, Juliane Fluck, Casey S. Greene, John H. Holmes, Aditya Kashyap, Rikke Linnemann Nielsen, Zhengqing Ouyang, Sebastian Schaaf, Jaclyn N. Taroni, Cui Tao, Yuping Zhang, Hongfang Liu

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

Systematic Design of Drug Repurposing-Oriented Alzheimer's Disease Ontology.

Fang Li, Mingqiang Wang, Huy Anh Pham, Yang Xiang, Muhammad Tuan Amith, Cui Tao, Jingcheng Du, Guozheng Rao

Proceedings of the 2019 IEEE International Conference on Healthcare Informatics, 2019

Evaluation of Five Sentence Similarity Models on Electronic Medical Records.

Qingyu Chen, Jingcheng Du, Sun Kim, W. John Wilbur, Zhiyong Lu

Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

Relation Extraction from Clinical Narratives Using Pre-trained Language Models.

Qiang Wei, Zongcheng Ji, Yuqi Si, Jingcheng Du, Jingqi Wang, Firat Tiryaki, Stephen Wu, Cui Tao, Kirk Roberts, Hua Xu

Proceedings of the AMIA 2019, 2019

2018

Extracting psychiatric stressors for suicide from social media using deep learning.

Jingcheng Du, Yaoyun Zhang, Jianhong Luo, Yuxi Jia, Qiang Wei, Cui Tao, Hua Xu

BMC Medical Informatics Decis. Mak., 2018

Comparing Pharmacovigilance Outcomes Between FAERS and EMR Data for Acute Mania Patients.

Xinyuan Zhang, Rui Duan, Jingcheng Du, Jing Huang, Yong Chen, Cui Tao

Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Exploring Temporal Patterns of Suicidal Behavior on Twitter.

Jianhong Luo, Jingcheng Du, Cui Tao, Hua Xu, Yaoyun Zhang

Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Term Standardization and Normalization for Research Domain Criteria (RDoC).

Fang Li, Guozheng Rao, Jingcheng Du, Yang Xiang, Yaoyun Zhang, Salih Selek, Jane Elizabeth Hamilton, Hua Xu, Cui Tao

Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Comparing adverse effects of Hepatitis C drugs using FAERS data.

Jing Huang, Xinyuan Zhang, Jiayi Tong, Jingcheng Du, Rui Duan, Liu Yang, Jason H. Moore, Yong Chen, Cui Tao

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Detecting Anatomical Entities in Clinical Text.

Jun Xu, Yaoyun Zhang, Jingcheng Du, Jingqi Wang, Firat Tiryaki, Hua Xu

Proceedings of the AMIA 2018, 2018

Asthma Onset Prediction Using Structured EMR Data.

Yang Xiang, Jun Xu, Jingcheng Du, Degui Zhi, Cui Tao

Proceedings of the AMIA 2018, 2018

Identification of Rare Adverse Events with Year-varying Reporting Rates for FLU4 Vaccine in VAERS.

Jiayi Tong, Jing Huang, Jingcheng Du, Yi Cai, Cui Tao, Yong Chen

Proceedings of the AMIA 2018, 2018

Construction of Drug Repurposing-oriented Alzheimer's Disease Ontology.

Fang Li, Jingcheng Du, Guozheng Rao, Cui Tao

Proceedings of the AMIA 2018, 2018

Mining Human Papillomavirus Vaccination Health Beliefs from Twitter Using Attentive Recurrent Neural Network.

Jingcheng Du, Fang Li, Yuxi Jia, Yang Xiang, Lu Tang, Sahiti Myneni, Cui Tao

Proceedings of the AMIA 2018, 2018

2017

Leveraging machine learning-based approaches to assess human papillomavirus vaccination sentiment trends with Twitter data.

Jingcheng Du, Jun Xu, Hsing-yi Song, Cui Tao

BMC Medical Informatics Decis. Mak., 2017

A signal detection method for temporal variation of adverse effect with vaccine adverse event reporting system data.

Yi Cai, Jingcheng Du, Jing Huang, Susan S. Ellenberg, Sean Hennessy, Cui Tao, Yong Chen

BMC Medical Informatics Decis. Mak., 2017

Optimization on machine learning based approaches for sentiment analysis on HPV vaccines related tweets.

Jingcheng Du, Jun Xu, Hsing-yi Song, Xiangyu Liu, Cui Tao

J. Biomed. Semant., 2017

Comparing Different Adverse Effects Among Multiple Drugs Using FAERS Data.

Jing Huang, Xinyuan Zhang, Jingcheng Du, Rui Duan, Liu Yang, Jason H. Moore, Yong Chen, Cui Tao

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Comparing the Human Papillomavirus Vaccination Opinions Trends from Different Twitter User Groups with a Machine Learning Based System and Semiparametric Nonlinear Regression.

Jingcheng Du, Jing Huang, Rui Duan, Yong Chen, Cui Tao

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Post-marketing Drug Safety Evaluation Using Data Mining Based on FAERS.

Rui Duan, Xinyuan Zhang, Jingcheng Du, Jing Huang, Cui Tao, Yong Chen

Proceedings of the Data Mining and Big Data - Second International Conference, 2017

Leveraging Machine Learning Based Approaches to Assess Human Papillomavirus Vaccination Sentiment Trends with Twitter.

Jingcheng Du, Jun Xu, Hsing-yi Song, Cui Tao

Proceedings of the Summit on Clinical Research Informatics, 2017

A pilot study of mining association between psychiatric stressors and symptoms in tweets.

Jingcheng Du, Yaoyun Zhang, Cui Tao, Hua Xu

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

A Twitter Study of the Relationship between the Geographic Variations of HPV Vaccination Rates and Online Information in the United States.

Hansi Zhang, Yunpeng Zhao, Christopher Wheldon, Xinsong Du, Terrell Brown, Yi Guo, Stephanie Staras, Jingcheng Du, Cui Tao, Jiang Bian

Proceedings of the AMIA 2017, 2017

2016

Erratum to: Extracting drug-enzyme relation from literature as evidence for drug drug interaction.

Yaoyun Zhang, Heng-Yi Wu, Jingcheng Du, Jun Xu, Jingqi Wang, Cui Tao, Lang Li, Hua Xu

J. Biomed. Semant., 2016

Extracting drug-enzyme relation from literature as evidence for drug drug interaction.

Yaoyun Zhang, Heng-Yi Wu, Jingcheng Du, Jun Xu, Jingqi Wang, Cui Tao, Lang Li, Hua Xu

J. Biomed. Semant., 2016

Trivalent influenza vaccine adverse symptoms analysis based on MedDRA terminology using VAERS data in 2011.

Jingcheng Du, Yi Cai, Yong Chen, Cui Tao

J. Biomed. Semant., 2016

A representational analysis of a temporal indeterminancy display in clinical events.

Mohcine Madkour, Hsing-yi Song, Jingcheng Du, Cui Tao

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015

Trivalent Influenza Vaccine Adverse Event Analysis Based On MedDRA System Organ Classes Using VAERS Data.

Cui Tao, Jingcheng Du, Yi Cai, Yong Chen

Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

2014

GSO: A Semantic Web Ontology to Capture 3D Genome Structure.

W. Jim Zheng, Jingcheng Du, Jijun Tang, Cui Tao

Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014