Jing Zhang

Orcid: 0000-0002-5970-0509

Affiliations:
  • Department of Computer Science, University of California, Irvine, CA, USA
  • Yale University, Department of Molecular Biophysics and Biochemistry, New Haven, CT, USA (former)


According to our database1, Jing Zhang authored at least 23 papers between 2018 and 2024.

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Bibliography

2024
scACT: Accurate Cross-modality Translation via Cycle-consistent Training from Unpaired Single-cell Data.
Proceedings of the 33rd ACM International Conference on Information and Knowledge Management, 2024

iMIRACLE: An Iterative Multi-View Graph Neural Network to Model Intercellular Gene Regulation From Spatial Transcriptomic Data.
Proceedings of the 33rd ACM International Conference on Information and Knowledge Management, 2024

2023
iHerd: an integrative hierarchical graph representation learning framework to quantify network changes and prioritize risk genes in disease.
PLoS Comput. Biol., 2023

2022
Venus: An efficient virus infection detection and fusion site discovery method using single-cell and bulk RNA-seq data.
PLoS Comput. Biol., October, 2022

Structure Detection in Three-Dimensional Cellular Cryoelectron Tomograms by Reconstructing Two-Dimensional Annotated Tilt Series.
J. Comput. Biol., 2022

Translator: A <i>Trans</i>fer <i>L</i>earning Approach to Facilitate Single-Cell <i>AT</i>AC-Seq Data Analysis fr<i>o</i>m <i>R</i>eference Dataset.
J. Comput. Biol., 2022

Deep-Precognitive Diagnosis: Preventing Future Pandemics by Novel Disease Detection With Biologically-Inspired Conv-Fuzzy Network.
IEEE Access, 2022

Unsupervised Multi-Task Learning for 3D Subtomogram Image Alignment, Clustering and Segmentation.
Proceedings of the 2022 IEEE International Conference on Image Processing, 2022

Deep Active Learning for Cryo-Electron Tomography Classification.
Proceedings of the 2022 IEEE International Conference on Image Processing, 2022

2021
Bayesian structural time series for biomedical sensor data: A flexible modeling framework for evaluating interventions.
PLoS Comput. Biol., 2021

Forest Fire Clustering: Cluster-oriented Label Propagation Clustering and Monte Carlo Verification Inspired by Forest Fire Dynamics.
CoRR, 2021

Active learning to classify macromolecular structures in situ for less supervision in cryo-electron tomography.
Bioinform., 2021

DECODE: a Deep-learning framework for Condensing enhancers and refining boundaries with large-scale functional assays.
Bioinform., 2021

Unsupervised Domain Alignment Based Open Set Structural Recognition of Macromolecules Captured By Cryo-Electron Tomography.
Proceedings of the 2021 IEEE International Conference on Image Processing, 2021

2020
AttPNet: Attention-Based Deep Neural Network for 3D Point Set Analysis.
Sensors, 2020

Few-shot learning for classification of novel macromolecular structures in cryo-electron tomograms.
PLoS Comput. Biol., 2020

Epigenome-based splicing prediction using a recurrent neural network.
PLoS Comput. Biol., 2020

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.
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Nat., 2020

NIMBus: a negative binomial regression based Integrative Method for mutation Burden Analysis.
BMC Bioinform., 2020

DiNeR: a Differential graphical model for analysis of co-regulation Network Rewiring.
BMC Bioinform., 2020

TopicNet: a framework for measuring transcriptional regulatory network change.
Bioinform., 2020

PUB-SalNet: A Pre-Trained Unsupervised Self-Aware Backpropagation Network for Biomedical Salient Segmentation.
Algorithms, 2020

2018
MOAT: efficient detection of highly mutated regions with the Mutations Overburdening Annotations Tool.
Bioinform., 2018


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