Jing Li

Orcid: 0000-0003-1160-6959

Affiliations:
  • Case Western Reserve University Cleveland, Computational Biology Lab
  • University of California at Riverside, Department of Computer Science, CAn USA (former)


According to our database1, Jing Li authored at least 64 papers between 2002 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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Bibliography

2024
Detection of Opioid Users from Reddit Posts via an Attention-based Bidirectional Recurrent Neural Network.
Proceedings of the 2024 8th International Conference on Medical and Health Informatics, 2024

2023
Deep learning versus conventional methods for missing data imputation: A review and comparative study.
Expert Syst. Appl., October, 2023

2022
Group-based network pruning via nonlinear relationship between convolution filters.
Appl. Intell., 2022

2020
iDrug: Integration of drug repositioning and drug-target prediction via cross-network embedding.
PLoS Comput. Biol., 2020

Learning Data-Driven Drug-Target-Disease Interaction via Neural Tensor Network.
Proceedings of the Twenty-Ninth International Joint Conference on Artificial Intelligence, 2020

Neural Tensor Model for Learning Multi-Aspect Factors in Recommender Systems.
Proceedings of the Twenty-Ninth International Joint Conference on Artificial Intelligence, 2020

2019
Modeling Relational Drug-Target-Disease Interactions via Tensor Factorization with Multiple Web Sources.
Proceedings of the World Wide Web Conference, 2019

Adversarial tensor factorization for context-aware recommendation.
Proceedings of the 13th ACM Conference on Recommender Systems, 2019

Data Poisoning Attacks on Cross-domain Recommendation.
Proceedings of the 28th ACM International Conference on Information and Knowledge Management, 2019

Collective Tensor Completion with Multiple Heterogeneous Side Information.
Proceedings of the 2019 IEEE International Conference on Big Data (IEEE BigData), 2019

Collaborative Ranking Tags and Items via Cross-domain Recommendation.
Proceedings of the 2019 IEEE International Conference on Big Data (IEEE BigData), 2019

Finding Stable Clustering for Noisy Data via Structure-Aware Representation.
Proceedings of the 2019 IEEE International Conference on Big Data (IEEE BigData), 2019

Large-scale Analysis of Drug Combinations by Integrating Multiple Heterogeneous Information Networks.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018
Ensemble learning for protein multiplex subcellular localization prediction based on weighted KNN with different features.
Appl. Intell., 2018

DrugCom: Synergistic Discovery of Drug Combinations Using Tensor Decomposition.
Proceedings of the IEEE International Conference on Data Mining, 2018

Exploiting Structural and Temporal Evolution in Dynamic Link Prediction.
Proceedings of the 27th ACM International Conference on Information and Knowledge Management, 2018

2017
Learning Multiple Similarities of Users and Items in Recommender Systems.
Proceedings of the 2017 IEEE International Conference on Data Mining, 2017

A Flexible and Robust Multi-Source Learning Algorithm for Drug Repositioning.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2015
Robust Local Community Detection: On Free Rider Effect and Its Elimination.
Proc. VLDB Endow., 2015

BSPAT: a fast online tool for DNA methylation co-occurrence pattern analysis based on high-throughput bisulfite sequencing data.
BMC Bioinform., 2015

2014
Drug repositioning by integrating target information through a heterogeneous network model.
Bioinform., 2014

2013
Bellerophon: a hybrid method for detecting interchromo-somal rearrangements at base pair resolution using next-generation sequencing data.
BMC Bioinform., 2013

Rare variant discovery and calling by sequencing pooled samples with overlaps.
Bioinform., 2013

2012
Generation of Synthetic Data and Experimental Designs in Evaluating Interactions for Association Studies.
J. Bioinform. Comput. Biol., 2012

Detecting genome-wide epistases based on the clustering of relatively frequent items.
Bioinform., 2012

Interaction Trees: Optimizing Ensembles of Decision Trees for Gene-Gene Interaction Detections.
Proceedings of the 11th International Conference on Machine Learning and Applications, 2012

Feature selections using AdaBoost: Application in gene-gene interaction detection.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

Integration of genomic and epigenomic features to predict meiotic recombination hotspots in human and mouse.
Proceedings of the ACM International Conference on Bioinformatics, 2012

Inferring novel associations between SNP sets and gene sets in eQTL study using sparse graphical model.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2011
Haplotype Reconstruction in Large Pedigrees with Untyped Individuals through IBD Inference.
J. Comput. Biol., 2011

Cancer progression analysis based on ordinal relationship of cancer stages and co-expression network modularity.
Int. J. Data Min. Bioinform., 2011

Detecting epistatic effects in association studies at a genomic level based on an ensemble approach.
Bioinform., 2011

Haplotype Reconstruction in Large Pedigrees with Many Untyped Individuals.
Proceedings of the Research in Computational Molecular Biology, 2011

Model based clustering approach for identifying structural variation using next generation sequencing data.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

Prediction of Trans-regulators of Recombination Hotspots in Mouse Genome.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

Generation of synthetic data in evaluating interactions for association studies.
Proceedings of the ACM International Conference on Bioinformatics, 2011

2010
Detecting Copy Number Variations from Array CGH Data Based on a Conditional Random Field Model.
J. Bioinform. Comput. Biol., 2010

Accurate HLA type inference using a weighted similarity graph.
BMC Bioinform., 2010

A novel approach for haplotype-based association analysis using family data.
BMC Bioinform., 2010

MAVEN: a tool for visualization and functional analysis of genome-wide association results.
Bioinform., 2010

Efficient identification of identical-by-descent status in pedigrees with many untyped individuals.
Bioinform., 2010

Detecting Genome-wide Haplotype Polymorphism by Combined Use of Mendelian Constraints and Local Population Structure.
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

Machine learning approaches for the investigation of features beyond seed matches affecting miRNA binding.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009
An Almost Linear Time Algorithm for a General Haplotype Solution on Tree Pedigrees with no Recombination and its Extensions.
J. Bioinform. Comput. Biol., 2009

Phylogenetic analysis of modularity in protein interaction networks.
BMC Bioinform., 2009

A Linear-Time Algorithm for Analyzing Array CGH Data Using Log Ratio Triangulation.
Proceedings of the Bioinformatics Research and Applications, 5th International Symposium, 2009

Identifying Gene Signatures from Cancer Progression Data Using Ordinal Analysis.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

2008
Prioritize and Select SNPs for Association Studies with Multi-Stage Designs.
J. Comput. Biol., 2008

A Survey on Haplotyping Algorithms for Tightly Linked Markers.
J. Bioinform. Comput. Biol., 2008

A novel strategy for detecting multiple loci in Genome-Wide Association Studies of complex diseases.
Int. J. Bioinform. Res. Appl., 2008

Generating samples for association studies based on HapMap data.
BMC Bioinform., 2008

2007
Study of gene function based on spatial co-expression in a high-resolution mouse brain atlas.
BMC Syst. Biol., 2007

Comparative Analysis of Gene-Coexpression Networks Across Species.
Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007

2006
Haplotype-based quantitative trait mapping using a clustering algorithm.
BMC Bioinform., 2006

2005
Novel Statistical Approach for Primary High-Throughput Screening Hit Selection.
J. Chem. Inf. Model., 2005

Computing the Minimum Recombinant Haplotype Configuration from Incomplete Genotype Data on a Pedigree by Integer Linear Programming.
J. Comput. Biol., 2005

Haplotype-based linkage disequilibrium mapping via direct data mining.
Bioinform., 2005

2004
An exact solution for finding minimum recombinant haplotype configurations on pedigrees with missing data by integer linear programming.
Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004

2003
The Haplotyping Problem: An Overview of Computational Models and Solutions.
J. Comput. Sci. Technol., 2003

Efficient Inference of Haplotypes from Genotypes on a Pedigree.
J. Bioinform. Comput. Biol., 2003

Minimum Recombiant Haplotype Configuration on Tree Pedigrees.
Proceedings of the Algorithms in Bioinformatics, Third International Workshop, 2003

Efficient rule-based haplotyping algorithms for pedigree data.
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003

Statistical Validation of Compound Structure-Selectivity Relationship Using NCI Cancer Database.
Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Scienes, 2003

2002
Approximating minimum quartet inconsistency (abstract).
Proceedings of the Thirteenth Annual ACM-SIAM Symposium on Discrete Algorithms, 2002


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