Jing-Fa Xiao

Orcid: 0000-0002-2835-4340

According to our database1, Jing-Fa Xiao authored at least 45 papers between 2002 and 2024.

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Bibliography

2024
GenBase: A Nucleotide Sequence Database.
Genom. Proteom. Bioinform., 2024

2023
ProPan: a comprehensive database for profiling prokaryotic pan-genome dynamics.
Nucleic Acids Res., January, 2023

TWAS Atlas: a curated knowledgebase of transcriptome-wide association studies.
Nucleic Acids Res., January, 2023

LncBook 2.0: integrating human long non-coding RNAs with multi-omics annotations.
Nucleic Acids Res., January, 2023

Cell Taxonomy: a curated repository of cell types with multifaceted characterization.
Nucleic Acids Res., January, 2023

HGD: an integrated homologous gene database across multiple species.
Nucleic Acids Res., January, 2023

Database Commons: A Catalog of Worldwide Biological Databases.
Genom. Proteom. Bioinform., 2023

2022
Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels.
Nucleic Acids Res., 2022

CancerSCEM: a database of single-cell expression map across various human cancers.
Nucleic Acids Res., 2022

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022.
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Nucleic Acids Res., 2022

TSomVar: a tumor-only somatic and germline variant identification method with random forest.
Briefings Bioinform., 2022

2021
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021.
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Nucleic Acids Res., 2021

LncExpDB: an expression database of human long non-coding RNAs.
Nucleic Acids Res., 2021

Genome Warehouse: A Public Repository Housing Genome-scale Data.
Genom. Proteom. Bioinform., 2021

The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types.
Genom. Proteom. Bioinform., 2021

Applications and challenges of high performance computing in genomics.
CCF Trans. High Perform. Comput., 2021

RefRGim: an intelligent reference panel reconstruction method for genotype imputation with convolutional neural networks.
Briefings Bioinform., 2021

2020
PADS Arsenal: a database of prokaryotic defense systems related genes.
Nucleic Acids Res., 2020

Compositional Variability and Mutation Spectra of Monophyletic SARS-CoV-2 Clades.
Genom. Proteom. Bioinform., 2020

The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR.
Genom. Proteom. Bioinform., 2020

The Elements of Data Sharing.
Genom. Proteom. Bioinform., 2020

2019
NucMap: a database of genome-wide nucleosome positioning map across species.
Nucleic Acids Res., 2019

iDog: an integrated resource for domestic dogs and wild canids.
Nucleic Acids Res., 2019

2018
Genome Variation Map: a data repository of genome variations in BIG Data Center.
Nucleic Acids Res., 2018

ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization.
Nucleic Acids Res., 2018

MethBank 3.0: a database of DNA methylomes across a variety of species.
Nucleic Acids Res., 2018

2017
GSA: Genome Sequence Archive<sup>*</sup>.
Genom. Proteom. Bioinform., 2017

MTD: a mammalian transcriptomic database to explore gene expression and regulation.
Briefings Bioinform., 2017

2016
Precision Medicine: What Challenges Are We Facing?
Genom. Proteom. Bioinform., 2016

BS-RNA: An efficient mapping and annotation tool for RNA bisulfite sequencing data.
Comput. Biol. Chem., 2016

2015
A Brief Review of Software Tools for Pangenomics.
Genom. Proteom. Bioinform., 2015

2014
RiceWiki: a wiki-based database for community curation of rice genes.
Nucleic Acids Res., 2014

Ribogenomics: the Science and Knowledge of RNA.
Genom. Proteom. Bioinform., 2014

Genome sequencing of high-penicillin producing industrial strain of Penicillium chrysogenum.
BMC Genom., 2014

PanGP: A tool for quickly analyzing bacterial pan-genome profile.
Bioinform., 2014

2013
AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification.
Bioinform., 2013

2012
PGAP: pan-genomes analysis pipeline.
Bioinform., 2012

BAsplice: Bi-direction alignment for detecting splice junctions.
Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

2011
Homology modeling and molecular dynamics simulation studies of human type 1 3beta-hydroxysteroid dehydrogenase: Toward the understanding of cofactor specificity.
J. Comput. Chem., 2011

2007
A Scenario on the Stepwise Evolution of the Genetic Code.
Genom. Proteom. Bioinform., 2007

2004
Theoretical study on the rate constants for the C2H5 + HBr C2H6 + Br reaction.
J. Comput. Chem., 2004

Ab initio direct dynamics studies on the reaction of H atom with CH3CH2Cl.
J. Comput. Chem., 2004

Homology modeling and molecular dynamics study of GSK3/SHAGGY-like kinase.
Comput. Biol. Chem., 2004

2002
DFT and Ab initio direct dynamics studies on the hydrogen abstraction reactions of chlorine atoms with CH4-nFn (n = 1-3).
J. Comput. Chem., 2002

Direct ab initio dynamics study on the rate constants and kinetic isotope effect for the reactions of H atoms with GeDn(CH3)4-n (n = 1-4).
J. Comput. Chem., 2002


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