Jijun Tang
Orcid: 0000-0002-6377-536X
According to our database1,
Jijun Tang
authored at least 159 papers
between 2002 and 2024.
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Bibliography
2024
ACM Comput. Surv., June, 2024
Prediction of LncRNA-Protein Interactions Based on Kernel Combinations and Graph Convolutional Networks.
IEEE J. Biomed. Health Informatics, April, 2024
TranSiam: Aggregating multi-modal visual features with locality for medical image segmentation.
Expert Syst. Appl., March, 2024
PPRTGI: A Personalized PageRank Graph Neural Network for TF-Target Gene Interaction Detection.
IEEE ACM Trans. Comput. Biol. Bioinform., 2024
Quant. Biol., 2024
A generalizable framework for unlocking missing reactions in genome-scale metabolic networks using deep learning.
CoRR, 2024
Dual-Channel Reliable Breast Ultrasound Image Classification Based on Explainable Attribution and Uncertainty Quantification.
CoRR, 2024
Aggregate-aware model with bidirectional edge generation for medical image segmentation.
Appl. Soft Comput., 2024
Dual-Channel Reliable Breast Ultrasound Image Classification Based on Explainable Attribution and Uncertainty Quantification.
Proceedings of the 6th International Conference on Image Processing and Machine Vision, 2024
Proceedings of the Advanced Intelligent Computing in Bioinformatics, 2024
2023
ComDock: A novel approach for protein-protein docking with an efficient fusing strategy.
Comput. Biol. Medicine, December, 2023
Identification of DNA N4-methylcytosine Sites via Multiview Kernel Sparse Representation Model.
IEEE Trans. Artif. Intell., October, 2023
Briefings Bioinform., September, 2023
Improved structure-related prediction for insufficient homologous proteins using MSA enhancement and pre-trained language model.
Briefings Bioinform., July, 2023
IK-DDI: a novel framework based on instance position embedding and key external text for DDI extraction.
Briefings Bioinform., May, 2023
Bioinform., January, 2023
Laplacian Regularized Sparse Representation Based Classifier for Identifying DNA N4-Methylcytosine Sites via $L_{2,1/2}$L2,1/2-Matrix Norm.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
Low Rank Matrix Factorization Algorithm Based on Multi-Graph Regularization for Detecting Drug-Disease Association.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023
IEEE ACM Trans. Audio Speech Lang. Process., 2023
A multi-scale multi-model deep neural network via ensemble strategy on high-throughput microscopy image for protein subcellular localization.
Expert Syst. Appl., 2023
DETA-Net: A Dual Encoder Network with Text-Guided Attention Mechanism for Skin-Lesions Segmentation.
Proceedings of the Advanced Intelligent Computing Technology and Applications, 2023
Prediction of LncRNA-Protein Interactions Based on Multi-kernel Fusion and Graph Auto-Encoders.
Proceedings of the Advanced Intelligent Computing Technology and Applications, 2023
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023
BTCN: Bridging the Gap Between Pre-trained and Downstream Models for Endoscopic Caries Detection.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023
2022
Identify ncRNA Subcellular Localization via Graph Regularized $k$k-Local Hyperplane Distance Nearest Neighbor Model on Multi-Kernel Learning.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
DeepFusionDTA: Drug-Target Binding Affinity Prediction With Information Fusion and Hybrid Deep-Learning Ensemble Model.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
Neural Comput. Appl., 2022
Inferring human microbe-drug associations via multiple kernel fusion on graph neural network.
Knowl. Based Syst., 2022
A multi-layer multi-kernel neural network for determining associations between non-coding RNAs and diseases.
Neurocomputing, 2022
EAA-Net: Rethinking the Autoencoder Architecture with Intra-class Features for Medical Image Segmentation.
CoRR, 2022
TranSiam: Fusing Multimodal Visual Features Using Transformer for Medical Image Segmentation.
CoRR, 2022
BAT-Net: An enhanced RNA Secondary Structure prediction via bidirectional GRU-based network with attention mechanism.
Comput. Biol. Chem., 2022
Bioinform., 2022
A hybrid deep learning framework for gene regulatory network inference from single-cell transcriptomic data.
Briefings Bioinform., 2022
Two-stage-vote ensemble framework based on integration of mutation data and gene interaction network for uncovering driver genes.
Briefings Bioinform., 2022
Identification of drug-target interactions via multiple kernel-based triple collaborative matrix factorization.
Briefings Bioinform., 2022
Identification of DNA N4-methylcytosine sites via fuzzy model on self representation.
Appl. Soft Comput., 2022
Identification of protein-nucleotide binding residues via graph regularized k-local hyperplane distance nearest neighbor model.
Appl. Intell., 2022
Multi-scale Neighborhood Attention Transformer on U-Net for Medical Image Segmentation.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
Integrating Prior Knowledge with Graph Encoder for Gene Regulatory Inference from Single-cell RNA-Seq Data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
BP-DDI: Drug-drug interaction prediction based on biological information and pharmacological text.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
2021
IEEE J. Biomed. Health Informatics, 2021
AIEpred: An Ensemble Predictive Model of Classifier Chain to Identify Anti-Inflammatory Peptides.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
Protein Crystallization Identification via Fuzzy Model on Linear Neighborhood Representation.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
Granular multiple kernel learning for identifying RNA-binding protein residues via integrating sequence and structure information.
Neural Comput. Appl., 2021
Identification of drug-target interactions via multi-view graph regularized link propagation model.
Neurocomputing, 2021
BMC Bioinform., 2021
Predicting subcellular location of protein with evolution information and sequence-based deep learning.
BMC Bioinform., 2021
A comprehensive overview and critical evaluation of gene regulatory network inference technologies.
Briefings Bioinform., 2021
Exploring effectiveness of ab-initio protein-protein docking methods on a novel antibacterial protein complex dataset.
Briefings Bioinform., 2021
Exploring associations of non-coding RNAs in human diseases via three-matrix factorization with hypergraph-regular terms on center kernel alignment.
Briefings Bioinform., 2021
DeepATT: a hybrid category attention neural network for identifying functional effects of DNA sequences.
Briefings Bioinform., 2021
Predicting MHC class I binder: existing approaches and a novel recurrent neural network solution.
Briefings Bioinform., 2021
MMFGRN: a multi-source multi-model fusion method for gene regulatory network reconstruction.
Briefings Bioinform., 2021
Drug-disease associations prediction via Multiple Kernel-based Dual Graph Regularized Least Squares.
Appl. Soft Comput., 2021
IEEE Access Special Section Editorial: Feature Representation and Learning Methods With Applications in Large-Scale Biological Sequence Analysis.
IEEE Access, 2021
Proceedings of the 2021 IEEE International Conference on Multimedia and Expo, 2021
RCGA-Net: An Improved Multi-hybrid Attention Mechanism Network in Biomedical Image Segmentation.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
Membrane Protein Identification via Multi-view Graph Regularized k-Local Hyperplane Distance Nearest Neighbor Model.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
Multi-AMP: detecting the antimicrobial peptides and their activities using the multi-task learning.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
GEU-Net: Rethinking the information transmission in the skip connection of U-Net architecture.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
MIASNet: A medical image segmentation method predicting future based on past and current cases.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
2020
DeepAVP: A Dual-Channel Deep Neural Network for Identifying Variable-Length Antiviral Peptides.
IEEE J. Biomed. Health Informatics, 2020
Neural Comput. Appl., 2020
Identification of Drug-Target Interactions via Dual Laplacian Regularized Least Squares with Multiple Kernel Fusion.
Knowl. Based Syst., 2020
Identification of Highest-Affinity Binding Sites of Yeast Transcription Factor Families.
J. Chem. Inf. Model., 2020
Identification of membrane protein types via multivariate information fusion with Hilbert-Schmidt Independence Criterion.
Neurocomputing, 2020
Identification of human microRNA-disease association via hypergraph embedded bipartite local model.
Comput. Biol. Chem., 2020
Achieving large and distant ancestral genome inference by using an improved discrete quantum-behaved particle swarm optimization algorithm.
BMC Bioinform., 2020
Critical evaluation of web-based prediction tools for human protein subcellular localization.
Briefings Bioinform., 2020
Human protein subcellular localization identification via fuzzy model on Kernelized Neighborhood Representation.
Appl. Soft Comput., 2020
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2020
An two-layer predictive model of ensemble classifier chain for detecting antimicrobial peptides.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
Melanoma Classification in Dermoscopy Images via Ensemble Learning on Deep Neural Network.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
2019
Identification of Drug-Side Effect Association via Semisupervised Model and Multiple Kernel Learning.
IEEE J. Biomed. Health Informatics, 2019
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
Identification of drug-side effect association via multiple information integration with centered kernel alignment.
Neurocomputing, 2019
Identifying protein-protein interface via a novel multi-scale local sequence and structural representation.
BMC Bioinform., 2019
LPI-KTASLP: Prediction of LncRNA-Protein Interaction by Semi-Supervised Link Learning With Multivariate Information.
IEEE Access, 2019
The Application of Machine Learning Algorithms to Diagnose CKD Stages and Identify Critical Metabolites Features.
Proceedings of the Bioinformatics and Biomedical Engineering, 2019
Identification of DNA-Binding Proteins via Fuzzy Multiple Kernel Model and Sequence Information.
Proceedings of the Intelligent Computing Theories and Application, 2019
2018
IEEE ACM Trans. Comput. Biol. Bioinform., 2018
J. Parallel Distributed Comput., 2018
J. Comput. Biol., 2018
A flexible approach to reconstruct the genomic spatial structure by the genetic algorithm.
Int. J. Comput. Biol. Drug Des., 2018
A computational approach for examining the roots and spreading patterns of fake news: Evolution tree analysis.
Comput. Hum. Behav., 2018
BMC Syst. Biol., 2018
2017
Identification of Protein-Ligand Binding Sites by Sequence Information and Ensemble Classifier.
J. Chem. Inf. Model., December, 2017
Local-DPP: An improved DNA-binding protein prediction method by exploring local evolutionary information.
Inf. Sci., 2017
Inf. Sci., 2017
BMC Syst. Biol., 2017
Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Down syndrome prediction/screening model based on deep learning and illumina genotyping array.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
2016
J. Comb. Optim., 2016
Neurocomputing, 2016
Comput. Biol. Chem., 2016
Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy.
BMC Syst. Biol., 2016
Predicting protein-protein interactions via multivariate mutual information of protein sequences.
BMC Bioinform., 2016
Algorithms Mol. Biol., 2016
2015
A Cooperative Co-Evolutionary Genetic Algorithm for Tree Scoring and Ancestral Genome Inference.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
Identification of Protein-Protein Interactions by Detecting Correlated Mutation at the Interface.
J. Chem. Inf. Model., 2015
Proceedings of the Algorithms in Bioinformatics - 15th International Workshop, 2015
An Iterative Approach for Phylogenetic Analysis of Tumor Progression Using FISH Copy Number.
Proceedings of the Bioinformatics Research and Applications - 11th International Symposium, 2015
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015
2014
IEEE ACM Trans. Comput. Biol. Bioinform., 2014
BMC Bioinform., 2014
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014
A Lin-Kernighan Heuristic for the DCJ Median Problem of Genomes with Unequal Contents.
Proceedings of the Computing and Combinatorics - 20th International Conference, 2014
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014
2013
Maximum Likelihood Phylogenetic Reconstruction from High-Resolution Whole-Genome Data and a Tree of 68 Eukaryotes.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013
Reconstructing Ancestral Genomic Orders Using Binary Encoding and Probabilistic Models.
Proceedings of the Bioinformatics Research and Applications, 9th International Symposium, 2013
Streaming Breakpoint Graph Analytics for Accelerating and Parallelizing the Computation of DCJ Median of Three Genomes.
Proceedings of the International Conference on Computational Science, 2013
Proceedings of the 8th International Conference on the Foundations of Digital Games, 2013
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013
Proceedings of the Models and Algorithms for Genome Evolution, 2013
2012
Int. J. Found. Comput. Sci., 2012
2011
Proceedings of the Foundations of Digital Games, 2011
Proceedings of the 2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2011
Proceedings of the 2011 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2011
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011
Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011
Proceedings of the 49th Annual Southeast Regional Conference, 2011
2010
BMC Bioinform., 2010
Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome.
BMC Bioinform., 2010
Proceedings of the Third International Symposium on Parallel Architectures, 2010
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010
2009
Int. J. Data Min. Bioinform., 2009
BMC Bioinform., 2009
BMC Bioinform., 2009
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009
2008
Improving Reversal Median Computation Using Commuting Reversals and Cycle Information.
J. Comput. Biol., 2008
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008
Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008
Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008
2007
Proceedings of the Experimental Algorithms, 6th International Workshop, 2007
Improving Inversion Median Computation Using Commuting Reversals and Cycle Information.
Proceedings of the Comparative Genomics, RECOMB 2007 International Workshop, 2007
Proceedings of the 2007 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2007), 2007
Three Sequence Alignment and Ancestor Inference with Affine Gap Costs.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
Reconstructing phylogenies from gene-content and gene-order data.
Proceedings of the Mathematics of Evolution and Phylogeny., 2007
2006
Proceedings of the Theory and Applications of Models of Computation, 2006
Inferring Ancestral Chloroplast Genomes with Inverted Repea.
Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, 2006
2005
Proceedings of the Combinatorial Pattern Matching, 16th Annual Symposium, 2005
Proceedings of the Computing and Combinatorics, 11th Annual International Conference, 2005
Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005
2004
Proceedings of the 4th IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2004), 2004
2003
Proceedings of the Algorithms and Data Structures, 8th International Workshop, 2003
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003
2002
J. Comput. Syst. Sci., 2002
Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data.
Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002