Jiayu Shang

According to our database, Jiayu Shang authored at least 16 papers between 2018 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

PhaGO: Protein function annotation for bacteriophages by integrating the genomic context.

Jiaojiao Guan, Yongxin Ji, Cheng Peng, Wei Zou, Xubo Tang, Jiayu Shang, Yanni Sun

CoRR, 2024

2023

GDmicro: classifying host disease status with GCN and deep adaptation network based on the human gut microbiome data.

Herui Liao, Jiayu Shang, Yanni Sun

Bioinform., December, 2023

PhaGenus: genus-level classification of bacteriophages using a Transformer model.

Jiaojiao Guan, Cheng Peng, Jiayu Shang, Xubo Tang, Yanni Sun

Briefings Bioinform., September, 2023

HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer.

Yongxin Ji, Jiayu Shang, Xubo Tang, Yanni Sun

Bioinform., May, 2023

PhaTYP: predicting the lifestyle for bacteriophages using BERT.

Jiayu Shang, Xubo Tang, Yanni Sun

Briefings Bioinform., January, 2023

Virus classification for viral genomic fragments using PhaGCN2.

Jingzhe Jiang, Wen-Guang Yuan, Jiayu Shang, Ying-Hui Shi, Li-Ling Yang, Min Liu, Peng Zhu, Tao Jin, Yanni Sun, Li-Hong Yuan

Briefings Bioinform., January, 2023

PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer.

Jiayu Shang, Cheng Peng, Xubo Tang, Yanni Sun

Bioinform., 2023

2022

HaploDMF: viral haplotype reconstruction from long reads via deep matrix factorization.

Dehan Cai, Jiayu Shang, Yanni Sun

Bioinform., December, 2022

RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data.

Xubo Tang, Jiayu Shang, Yanni Sun

Briefings Bioinform., 2022

Accurate identification of bacteriophages from metagenomic data using Transformer.

Jiayu Shang, Xubo Tang, Ruocheng Guo, Yanni Sun

Briefings Bioinform., 2022

CHERRY: a Computational metHod for accuratE pRediction of virus-pRokarYotic interactions using a graph encoder-decoder model.

Jiayu Shang, Yanni Sun

Briefings Bioinform., 2022

2021

Detecting the hosts of bacteriophages using GCN-based semi-supervised learning.

Jiayu Shang, Yanni Sun

CoRR, 2021

Bacteriophage classification for assembled contigs using graph convolutional network.

Jiayu Shang, Jingzhe Jiang, Yanni Sun

Bioinform., 2021

2020

ProDOMA: improve PROtein DOMAin classification for third-generation sequencing reads using deep learning.

Nan Du, Jiayu Shang, Yanni Sun

CoRR, 2020

2019

A binning tool to reconstruct viral haplotypes from assembled contigs.

Jiao Chen, Jiayu Shang, Jianrong Wang, Yanni Sun

BMC Bioinform., 2019

2018

Fast detection method of quick response code based on run-length coding.

Shiren Li, Jiayu Shang, Zhikui Duan, Junwei Huang

IET Image Process., 2018