Jiayu Shang

Orcid: 0000-0001-5974-4985

According to our database1, Jiayu Shang authored at least 15 papers between 2018 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Bibliography

2024
PhaGO: Protein function annotation for bacteriophages by integrating the genomic context.
CoRR, 2024

2023
GDmicro: classifying host disease status with GCN and deep adaptation network based on the human gut microbiome data.
Bioinform., December, 2023

HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer.
Bioinform., May, 2023

PhaTYP: predicting the lifestyle for bacteriophages using BERT.
Briefings Bioinform., January, 2023

Virus classification for viral genomic fragments using PhaGCN2.
Briefings Bioinform., January, 2023

PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer.
Bioinform., 2023

2022
HaploDMF: viral haplotype reconstruction from long reads via deep matrix factorization.
Bioinform., December, 2022

RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data.
Briefings Bioinform., 2022

Accurate identification of bacteriophages from metagenomic data using Transformer.
Briefings Bioinform., 2022

CHERRY: a Computational metHod for accuratE pRediction of virus-pRokarYotic interactions using a graph encoder-decoder model.
Briefings Bioinform., 2022

2021
Detecting the hosts of bacteriophages using GCN-based semi-supervised learning.
CoRR, 2021

Bacteriophage classification for assembled contigs using graph convolutional network.
Bioinform., 2021

2020
ProDOMA: improve PROtein DOMAin classification for third-generation sequencing reads using deep learning.
CoRR, 2020

2019
A binning tool to reconstruct viral haplotypes from assembled contigs.
BMC Bioinform., 2019

2018
Fast detection method of quick response code based on run-length coding.
IET Image Process., 2018


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