Jianyi Yang

Orcid: 0000-0003-2912-7737

Affiliations:
  • Shandong University, Qingdao, China


According to our database1, Jianyi Yang authored at least 38 papers between 2008 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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2018
2020
2022
2024
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Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Links

Online presence:

On csauthors.net:

Bibliography

2024
RNA threading with secondary structure and sequence profile.
Bioinform., February, 2024

Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein-ligand Interactions.
Genom. Proteom. Bioinform., 2024

FP-Zernike: An Open-source Structural Database Construction Toolkit for Fast Structure Retrieval.
Genom. Proteom. Bioinform., 2024

2023
A unified approach to protein domain parsing with inter-residue distance matrix.
Bioinform., February, 2023

CryoAlign: feature-based method for global and local 3D alignment of EM density maps.
CoRR, 2023

2022
On Monomeric and Multimeric Structures-Based Protein-Ligand Interactions.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Single-sequence protein structure prediction using supervised transformer protein language models.
Nat. Comput. Sci., 2022

Toward the assessment of predicted inter-residue distance.
Bioinform., 2022

2021
RNA Flexibility Prediction With Sequence Profile and Predicted Solvent Accessibility.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Improved estimation of model quality using predicted inter-residue distance.
Bioinform., 2021

RNA inter-nucleotide 3D closeness prediction by deep residual neural networks.
Bioinform., 2021

Recognition of small molecule-RNA binding sites using RNA sequence and structure.
Bioinform., 2021

Human host status inference from temporal microbiome changes via recurrent neural networks.
Briefings Bioinform., 2021

2020
Protein contact prediction using metagenome sequence data and residual neural networks.
Bioinform., 2020

CATHER: a novel threading algorithm with predicted contacts.
Bioinform., 2020

2019
Enhanced prediction of RNA solvent accessibility with long short-term memory neural networks and improved sequence profiles.
Bioinform., 2019

Improving the prediction of protein-nucleic acids binding residues via multiple sequence profiles and the consensus of complementary methods.
Bioinform., 2019

2018
COACH-D: improved protein-ligand binding sites prediction with refined ligand-binding poses through molecular docking.
Nucleic Acids Res., 2018

mTM-align: a server for fast protein structure database search and multiple protein structure alignment.
Nucleic Acids Res., 2018

Improving Sequence-Based Prediction of Protein-Peptide Binding Residues by Introducing Intrinsic Disorder and a Consensus Method.
J. Chem. Inf. Model., 2018

CoABind: a novel algorithm for Coenzyme A (CoA)- and CoA derivatives-binding residues prediction.
Bioinform., 2018

mTM-align: an algorithm for fast and accurate multiple protein structure alignment.
Bioinform., 2018

A large-scale comparative assessment of methods for residue-residue contact prediction.
Briefings Bioinform., 2018

2017
Structural and Sequence Similarity Makes a Significant Impact on Machine-Learning-Based Scoring Functions for Protein-Ligand Interactions.
J. Chem. Inf. Model., 2017

An ensemble approach to protein fold classification by integration of template-based assignment and support vector machine classifier.
Bioinform., 2017

DLTree: efficient and accurate phylogeny reconstruction using the dynamical language method.
Bioinform., 2017

2016
Recognizing metal and acid radical ion-binding sites by integrating <i>ab initio</i> modeling with template-based transferals.
Bioinform., 2016

2015
I-TASSER server: new development for protein structure and function predictions.
Nucleic Acids Res., 2015

GLASS: a comprehensive database for experimentally validated GPCR-ligand associations.
Bioinform., 2015

2013
BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions.
Nucleic Acids Res., 2013

Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment.
Bioinform., 2013

2012
COFACTOR: an accurate comparative algorithm for structure-based protein function annotation.
Nucleic Acids Res., 2012

2011
A Consensus Approach to Predicting Protein Contact Map via Logistic Regression.
Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011

2010
Constructing Consensus Genetic Maps in Comparative Analysis.
J. Comput. Biol., 2010

Prediction of protein structural classes for low-homology sequences based on predicted secondary structure.
BMC Bioinform., 2010

An improved classification of G-protein-coupled receptors using sequence-derived features.
BMC Bioinform., 2010

2008
Human Pol II promoter recognition based on primary sequences and free energy of dinucleotides.
BMC Bioinform., 2008

Protein Structure Classification Based on Chaos Game Representation and Multifractal Analysis.
Proceedings of the Fourth International Conference on Natural Computation, 2008


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