Jianyi Yang
Orcid: 0000-0003-2912-7737Affiliations:
- Shandong University, Qingdao, China
According to our database1,
Jianyi Yang
authored at least 38 papers
between 2008 and 2024.
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Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
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on orcid.org
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Bibliography
2024
Bioinform., February, 2024
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein-ligand Interactions.
Genom. Proteom. Bioinform., 2024
FP-Zernike: An Open-source Structural Database Construction Toolkit for Fast Structure Retrieval.
Genom. Proteom. Bioinform., 2024
2023
Bioinform., February, 2023
CryoAlign: feature-based method for global and local 3D alignment of EM density maps.
CoRR, 2023
2022
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
Single-sequence protein structure prediction using supervised transformer protein language models.
Nat. Comput. Sci., 2022
2021
RNA Flexibility Prediction With Sequence Profile and Predicted Solvent Accessibility.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
Bioinform., 2021
Bioinform., 2021
Bioinform., 2021
Human host status inference from temporal microbiome changes via recurrent neural networks.
Briefings Bioinform., 2021
2020
Protein contact prediction using metagenome sequence data and residual neural networks.
Bioinform., 2020
2019
Enhanced prediction of RNA solvent accessibility with long short-term memory neural networks and improved sequence profiles.
Bioinform., 2019
Improving the prediction of protein-nucleic acids binding residues via multiple sequence profiles and the consensus of complementary methods.
Bioinform., 2019
2018
COACH-D: improved protein-ligand binding sites prediction with refined ligand-binding poses through molecular docking.
Nucleic Acids Res., 2018
mTM-align: a server for fast protein structure database search and multiple protein structure alignment.
Nucleic Acids Res., 2018
Improving Sequence-Based Prediction of Protein-Peptide Binding Residues by Introducing Intrinsic Disorder and a Consensus Method.
J. Chem. Inf. Model., 2018
CoABind: a novel algorithm for Coenzyme A (CoA)- and CoA derivatives-binding residues prediction.
Bioinform., 2018
Bioinform., 2018
A large-scale comparative assessment of methods for residue-residue contact prediction.
Briefings Bioinform., 2018
2017
Structural and Sequence Similarity Makes a Significant Impact on Machine-Learning-Based Scoring Functions for Protein-Ligand Interactions.
J. Chem. Inf. Model., 2017
An ensemble approach to protein fold classification by integration of template-based assignment and support vector machine classifier.
Bioinform., 2017
DLTree: efficient and accurate phylogeny reconstruction using the dynamical language method.
Bioinform., 2017
2016
Recognizing metal and acid radical ion-binding sites by integrating <i>ab initio</i> modeling with template-based transferals.
Bioinform., 2016
2015
Nucleic Acids Res., 2015
GLASS: a comprehensive database for experimentally validated GPCR-ligand associations.
Bioinform., 2015
2013
BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions.
Nucleic Acids Res., 2013
Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment.
Bioinform., 2013
2012
COFACTOR: an accurate comparative algorithm for structure-based protein function annotation.
Nucleic Acids Res., 2012
2011
Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011
2010
Prediction of protein structural classes for low-homology sequences based on predicted secondary structure.
BMC Bioinform., 2010
An improved classification of G-protein-coupled receptors using sequence-derived features.
BMC Bioinform., 2010
2008
Human Pol II promoter recognition based on primary sequences and free energy of dinucleotides.
BMC Bioinform., 2008
Protein Structure Classification Based on Chaos Game Representation and Multifractal Analysis.
Proceedings of the Fourth International Conference on Natural Computation, 2008