Jianlin Shi

According to our database, Jianlin Shi authored at least 19 papers between 2014 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Representing and utilizing clinical textual data for real world studies: An OHDSI approach.

Vipina Kuttichi Keloth, Juan M. Banda, Michael J. Gurley, Paul M. Heider, Georgina Kennedy, Hongfang Liu, Feifan Liu, Timothy A. Miller, Karthik Natarajan, Olga V. Patterson, Yifan Peng, Kalpana Raja, Ruth M. Reeves, Masoud Rouhizadeh, Jianlin Shi, Xiaoyan Wang, Yanshan Wang, Wei-Qi Wei, Andrew E. Williams, Rui Zhang, Rimma Belenkaya, Christian G. Reich, Clair Blacketer, Patrick B. Ryan, George Hripcsak, Noémie Elhadad, Hua Xu

J. Biomed. Informatics, June, 2023

A deep learning approach for medication disposition and corresponding attributes extraction.

Qiwei Gan, Mengke Hu, Kelly S. Peterson, Hannah Eyre, Patrick R. Alba, Annie E. Bowles, Johnathan C. Stanley, Scott L. DuVall, Jianlin Shi

J. Biomed. Informatics, 2023

2022

GARDE: a standards-based clinical decision support platform for identifying population health management cohorts.

Richard L. Bradshaw, Kensaku Kawamoto, Kimberly A. Kaphingst, Wendy Kohlmann, Rachel Hess, Michael C. Flynn, Claude J. Nanjo, Phillip B. Warner, Jianlin Shi, Keaton L. Morgan, Kadyn Kimball, Pallavi Ranade-Kharkar, Ophira Ginsburg, Melody Goodman, Rachelle Chambers, Devin M. Mann, Scott P. Narus, Javier Gonzalez, Shane Loomis, Priscilla Chan, Rachel Monahan, Emerson P. Borsato, David E. Shields, Douglas K. Martin, Cecilia M. Kessler, Guilherme Del Fiol

J. Am. Medical Informatics Assoc., 2022

2021

Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python.

Hannah Eyre, Alec B. Chapman, Kelly S. Peterson, Jianlin Shi, Patrick R. Alba, Makoto M. Jones, Tamara L. Box, Scott L. DuVall, Olga V. Patterson

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Removing barriers to clinical text processing with MedSpaCy.

Hannah Eyre, Olga V. Patterson, Jianlin Shi, Kelly S. Peterson, Alec B. Chapman, Patrick R. Alba, Scott L. DuVall

Proceedings of the AMIA 2020, 2020

2019

Automatic identification of recent high impact clinical articles in PubMed to support clinical decision making using time-agnostic features.

Jiantao Bian, Samir E. AbdelRahman, Jianlin Shi, Guilherme Del Fiol

J. Biomed. Informatics, 2019

A generic rule-based system for clinical trial patient selection.

Jianlin Shi, Kevin Graves, John F. Hurdle

CoRR, 2019

FastContext: an efficient and scalable implementation of the ConText algorithm.

Jianlin Shi, John F. Hurdle

CoRR, 2019

Using Natural Language Processing to improve EHR Structured Data-based Surgical Site Infection Surveillance.

Jianlin Shi, Siru Liu, Liese C. Pruitt, Carolyn Luppens, Jeffrey P. Ferraro, Adi V. Gundlapalli, Wendy W. Chapman, Brian T. Bucher

Proceedings of the AMIA 2019, 2019

Extracting Disease Onset from Family History Comments in the Electronic Health Record using Fast Healthcare Interoperability Resources.

Jianlin Shi, Kensaku Kawamoto, Wendy Kohlmann, Danielle L. Mowery, Richard L. Bradshaw, Subhadeep Deep, Wendy W. Chapman, Guilherme Del Fiol

Proceedings of the AMIA 2019, 2019

Determination of Marital Status of Patients from Structured and Unstructured Electronic Healthcare Data.

Brian T. Bucher, Jianlin Shi, Robert J. Pettit, Jeffrey P. Ferraro, Wendy W. Chapman, Adi V. Gundlapalli

Proceedings of the AMIA 2019, 2019

2018

Trie-based rule processing for clinical NLP: A use-case study of <i>n-trie</i>, making the ConText algorithm more efficient and scalable.

Jianlin Shi, John F. Hurdle

J. Biomed. Informatics, 2018

2017

Extracting Intrauterine Device Usage from Clinical Texts Using Natural Language Processing.

Jianlin Shi, Danielle L. Mowery, Mingyuan Zhang, Jessica Sanders, Wendy W. Chapman, Lori Gawron

Proceedings of the 2017 IEEE International Conference on Healthcare Informatics, 2017

2016

A method for the development of disease-specific reference standards vocabularies from textual biomedical literature resources.

Liqin Wang, Bruce E. Bray, Jianlin Shi, Guilherme Del Fiol, Peter J. Haug

Artif. Intell. Medicine, 2016

PrecMed: A collaborative environment for precision medicine research and practice.

Jianlin Shi, Lance Pflieger

Proceedings of the AMIA 2016, 2016

RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text.

Jianlin Shi, Danielle L. Mowery, Kristina M. Doing-Harris, John F. Hurdle

Proceedings of the AMIA 2016, 2016

2015

UtahPOET: Disorder Mention Identification and Context Slot Filling with Cognitive Inspiration.

Kristina Doing-Harris, Sean Igo, Jianlin Shi, John F. Hurdle

Proceedings of the 9th International Workshop on Semantic Evaluation, 2015

POETenceph - Automatic identification of clinical notes indicating encephalopathy using a realist ontology.

Kristina Doing-Harris, Charlene R. Weir, Sean Igo, Jianlin Shi, YiJun Shao, John F. Hurdle

Proceedings of the AMIA 2015, 2015

2014

Online Patient Center: Expanding Patient Portals by Integrating Patient-Generated Data Directly into a Primary Care Provider's EHR Workflow.

Jon-David Ethington, Jianlin Shi, Scott D. Nelson

Proceedings of the AMIA 2014, 2014