Jianhua Ruan

Orcid: 0000-0002-5622-3137

According to our database1, Jianhua Ruan authored at least 47 papers between 2003 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
A Novel Feature Space Augmentation Method to Improve Classification Performance and Evaluation Reliability.
Proceedings of the 30th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2024

2022
Construction and Evaluation of Robust Interpretation Models for Breast Cancer Metastasis Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

2020
Robust edge-based biomarker discovery improves prediction of breast cancer metastasis.
BMC Bioinform., 2020

2019
Probabilistic Margin-Aware Multi-Label Feature Selection by Preserving Spatial Consistency.
Proceedings of the International Joint Conference on Neural Networks, 2019

A Novel Multiple Classifier Generation and Combination Framework Based on Fuzzy Clustering and Individualized Ensemble Construction.
Proceedings of the 2019 IEEE International Conference on Data Science and Advanced Analytics, 2019

2018
The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: bioinformatics towards translational applications.
BMC Bioinform., 2018

ANNC: AUC-Based Feature Selection by Maximizing Nearest Neighbor Complementarity.
Proceedings of the PRICAI 2018: Trends in Artificial Intelligence, 2018

Probabilistic Topic and Role Model for Information Diffusion in Social Network.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2018

An integrative approach to transcriptional co-regulatory network construction and characterization in Arabidopsis.
Proceedings of the 8th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2018

Semi-Supervised Multi-Label Feature Selection by Preserving Feature-Label Space Consistency.
Proceedings of the 27th ACM International Conference on Information and Knowledge Management, 2018

2017
Utilizing networks for differential analysis of chromatin interactions.
J. Bioinform. Comput. Biol., 2017

The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: putting systems biology to work.
BMC Syst. Biol., 2017

The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: from big data to big analytical tools.
BMC Bioinform., 2017

Computational modeling of in vivo and in vitro protein-DNA interactions by multiple instance learning.
Bioinform., 2017

2016
Structure-based prediction of drug side effects using a novel classification algorithm.
Int. J. Comput. Biol. Drug Des., 2016

Advancing Systems Biology in the International Conference on Intelligent Biology and Medicine (ICIBM) 2015.
BMC Syst. Biol., 2016

2014
A personalized committee classification approach to improving prediction of breast cancer metastasis.
Bioinform., 2014

2013
A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks.
BMC Genom., 2013

A novel link prediction algorithm for reconstructing protein-protein interaction networks by topological similarity.
Bioinform., 2013

A structure-based approach to predicting in vitro transcription factor-DNA interaction.
Proceedings of the 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, 2013

Network-based pathway enrichment analysis.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

An ensemble approach for drug side effect prediction.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012
Functional evaluation and analysis of predicted miRNA-mRNA regulatory network.
Proceedings of the Research in Applied Computation Symposium, 2012

A novel approach for cancer outcome prediction using personalized classifier.
Proceedings of the Research in Applied Computation Symposium, 2012

A random walk based approach for improving protein-protein interaction network and protein complex prediction.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Network-based classification of recurrent endometrial cancers using high-throughput DNA methylation data.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2011
Systematic identification of functional modules and cis-regulatory elements in Arabidopsis thaliana.
BMC Bioinform., 2011

Identification of biomarkers in breast cancer metastasis by integrating protein-protein interaction network and gene expression data.
Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

2010
Building and analyzing protein interactome networks by cross-species comparisons.
BMC Syst. Biol., 2010

A general co-expression network-based approach to gene expression analysis: comparison and applications.
BMC Syst. Biol., 2010

A particle swarm optimization-based algorithm for finding gapped motifs.
BioData Min., 2010

Finding Gapped Motifs by a Novel Evolutionary Algorithm.
Proceedings of the Evolutionary Computation, 2010

Promoter prediction based on a multiple instance learning scheme.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009
A novel swarm intelligence algorithm for finding DNA motifs.
Int. J. Comput. Biol. Drug Des., 2009

A systems biology approach to the identification and analysis of transcriptional regulatory networks in osteocytes.
BMC Bioinform., 2009

A Fully Automated Method for Discovering Community Structures in High Dimensional Data.
Proceedings of the ICDM 2009, 2009

2007
Characterization and Identification of MicroRNA Core Promoters in Four Model Species.
PLoS Comput. Biol., 2007

An Efficient Spectral Algorithm for Network Community Discovery and Its Applications to Biological and Social Networks.
Proceedings of the 7th IEEE International Conference on Data Mining (ICDM 2007), 2007

2006
A bi-dimensional regression tree approach to the modeling of gene expression regulation.
Bioinform., 2006

Identification and Evaluation of Functional Modules in Gene Co-expression Networks.
Proceedings of the Systems Biology and Computational Proteomics, 2006

Identification and Evaluation of Weak Community Structures in Networks.
Proceedings of the Proceedings, 2006

2005
CAGER: classification analysis of gene expression regulation using multiple information sources.
BMC Bioinform., 2005

<i>Cis</i>-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in <i>Arabidopsis thaliana</i>.
Bioinform., 2005

Computational Characterization and Identification of Core Promoters of MicroRNA Genes in <i>C. elegans</i> , <i>H. sapiens</i> and <i>A. thaliana</i>.
Proceedings of the Systems Biology and Regulatory Genomics, 2005

2004
ILM: a web server for predicting RNA secondary structures with pseudoknots.
Nucleic Acids Res., 2004

An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
Bioinform., 2004

2003
An Iterative Loop Matching Approach to the Prediction of RNA Secondary Stru.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003


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