Jeremy L. Warner

Orcid: 0000-0002-2851-7242

According to our database1, Jeremy L. Warner authored at least 47 papers between 2012 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Links

On csauthors.net:

Bibliography

2023
Next-generation phenotyping: introducing phecodeX for enhanced discovery research in medical phenomics.
Bioinform., October, 2023

Natural language processing to automatically extract the presence and severity of esophagitis in notes of patients undergoing radiotherapy.
CoRR, 2023

Introducing a Comprehensive Score of Systemic Anticancer Treatment Relevance.
Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

2022
Quantitating and assessing interoperability between electronic health records.
J. Am. Medical Informatics Assoc., 2022

Evaluation of mCODE Coverage in EHR: a Scoping Review of Cancer Natural Language Processing.
Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

DeepPhe: Natural Language Processing Tools for Cancer Research and Surveillance.
Proceedings of the AMIA 2022, 2022

2021
A retrospective approach to evaluating potential adverse outcomes associated with delay of procedures for cardiovascular and cancer-related diagnoses in the context of COVID-19.
J. Biomed. Informatics, 2021

2020
Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity.
J. Am. Medical Informatics Assoc., 2020

Extracting Relations between Radiotherapy Treatment Details.
Proceedings of the 3rd Clinical Natural Language Processing Workshop, 2020

2019
HemOnc: A new standard vocabulary for chemotherapy regimen representation in the OMOP common data model.
J. Biomed. Informatics, 2019

Developing Customizable Cancer Information Extraction Modules for Pathology Reports Using CLAMP.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Patient Messaging Content Associated with Initiating Hormonal Therapy after a Breast Cancer Diagnosis.
Proceedings of the AMIA 2019, 2019

HemOnc.org: Evaluation of Information Models for Cancer Therapy Representation.
Proceedings of the AMIA 2019, 2019

Flipping Clinical Documentation on its Head.
Proceedings of the AMIA 2019, 2019

Continuum of Interoperability in Oncology EHR Implementations.
Proceedings of the AMIA 2019, 2019

2018
The therapy is making me sick: how online portal communications between breast cancer patients and physicians indicate medication discontinuation.
J. Am. Medical Informatics Assoc., 2018

Learning When Communications Between Healthcare Providers Indicate Hormonal Therapy Medication Discontinuation.
Proceedings of the AMIA 2018, 2018

Computable Longitudinal Patient Trajectories.
Proceedings of the AMIA 2018, 2018

Exploring Mutational Heterogeneity in the GENIE Tumor Database Using Visual Analytics.
Proceedings of the AMIA 2018, 2018

connecTPL: A Tool for Connecting Drugs and Publications to their Clinical Trials.
Proceedings of the AMIA 2018, 2018

2017
Using network graphs to visualize changing documentation styles in an oncology practice before and after opennotes implementation.
Proceedings of the IEEE Workshop on Visual Analytics in Healthcare, 2017

The Power of the Patient Voice: Learning Indicators of Treatment Adherence From An Online Breast Cancer Forum.
Proceedings of the Eleventh International Conference on Web and Social Media, 2017

Identifying Metastases related Information from Pathology Reports of Lung Cancer Patients.
Proceedings of the Summit on Clinical Research Informatics, 2017

Identification of Patient Subgroups in Metastatic Breast Cancer Patients Based on Somatic Copy Number Alterations: A Bipartite Network Analysis.
Proceedings of the AMIA 2017, 2017

2016
Classification of hospital acquired complications using temporal clinical information from a large electronic health record.
J. Biomed. Informatics, 2016

Combining billing codes, clinical notes, and medications from electronic health records provides superior phenotyping performance.
J. Am. Medical Informatics Assoc., 2016

CUSTOM-SEQ: a prototype for oncology rapid learning in a comprehensive EHR environment.
J. Am. Medical Informatics Assoc., 2016

SMART precision cancer medicine: a FHIR-based app to provide genomic information at the point of care.
J. Am. Medical Informatics Assoc., 2016

Pragmatic precision oncology: the secondary uses of clinical tumor molecular profiling.
J. Am. Medical Informatics Assoc., 2016

Workshop on Visual Analytics in Healthcare.
Proceedings of the AMIA 2016, 2016

2015
Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality.
J. Am. Medical Informatics Assoc., 2015

Development, implementation, and initial evaluation of a foundational open interoperability standard for oncology treatment planning and summarization.
J. Am. Medical Informatics Assoc., 2015

Seeing the forest through the trees: uncovering phenomic complexity through interactive network visualization.
J. Am. Medical Informatics Assoc., 2015

SMART on FHIR Genomics: facilitating standardized clinico-genomic apps.
J. Am. Medical Informatics Assoc., 2015

Visualizing High Dimensional Clinical and Tumor Genotyping Data.
Proceedings of the AMIA 2015, 2015

2014
Mining electronic health record data to detect drug-repurposing signals for cancers.
Proceedings of the AMIA 2014, 2014

Evaluation of Diagnosis Codes, Clinical Notes, and Medications on Identifying Subjects with a Specific Disease Phenotype.
Proceedings of the AMIA 2014, 2014

Identifying Metastases from Pathology Reports in Lung Cancer Patients.
Proceedings of the AMIA 2014, 2014

PheWAS and Genetics Define Subphenotypes in Drug Response.
Proceedings of the AMIA 2014, 2014

2013
Brief communication: External phenome analysis enables a rational federated query strategy to detect changing rates of treatment-related complications associated with multiple myeloma.
J. Am. Medical Informatics Assoc., 2013

Automated Synthesis and Visualization of a Chemotherapy Treatment Regimen Network.
Proceedings of the MEDINFO 2013, 2013

Analytic Approaches to Phenotypic Complexity.
Proceedings of the MEDINFO 2013, 2013

Phenometric analysis of electronic health records: a new approach to visualization of high dimensional biomedical information.
Proceedings of the AMIA 2013, 2013

Sharing of Genomic Information: Perspectives from Stakeholders.
Proceedings of the AMIA 2013, 2013

Constructing a Novel Cancer Ontology.
Proceedings of the AMIA 2013, 2013

2012
Towards an Annotation Schema for Cancer Trajectory State Detection.
Proceedings of the AMIA 2012, 2012

Phenome-Based Analysis as a Means for Discovering Context-Dependent Clinical Reference Ranges.
Proceedings of the AMIA 2012, 2012


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