Jeremy Goecks

According to our database, Jeremy Goecks authored at least 21 papers between 2000 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update.

Enis Afgan, Anton Nekrutenko, Björn A. Grüning, Daniel J. Blankenberg, Jeremy Goecks, Michael C. Schatz, Alexander E. Ostrovsky, Alexandru Mahmoud, Andrew J. Lonie, Anna Syme, Anne Fouilloux, Anthony Bretaudeau, Anup Kumar, Arthur C. Eschenlauer, Assunta D. Desanto, Aysam Guerler, Beatriz Serrano-Solano, Bérénice Batut, Bradley W. Langhorst, Bridget Carr, Bryan A. Raubenolt, Cameron J. Hyde, Catherine J. Bromhead, Christopher B. Barnett, Coline Royaux, Cristóbal Gallardo, Daniel J. Fornika, Dannon Baker, Dave Bouvier, Dave Clements, David A. de Lima Morais, David Lopez Tabernero, Delphine Larivière, Engy Nasr, Federico Zambelli, Florian Heyl, Fotis E. Psomopoulos, Frederik Coppens, Gareth R. Price, Gianmauro Cuccuru, Gildas Le Corguillé, Gregory Von Kuster, Gulsum Gudukbay, Helena Rasche, Hans-Rudolf Hotz, Ignacio Eguinoa, Igor V. Makunin, Isuru Ranawaka, James Taylor, Jayadev Joshi, Jennifer Hillman-Jackson, John Chilton, Kaivan Kamali, Keith Suderman, Krzysztof Poterlowicz, Yvan Le Bras, Lucille Lopez-Delisle, Luke Sargent, Madeline E. Bassetti, Marco Antonio Tangaro, Marius van den Beek, Martin Cech, Matthias Bernt, Matthias Fahrner, Mehmet Tekman, Melanie Christine Föll, Michael R. Crusoe, Miguel Roncoroni, Natalie Kucher, Nate Coraor, Nicholas Stoler, Nick Rhodes, Nicola Soranzo, Niko Pinter, Nuwan Goonasekera, Pablo A. Moreno, Pavankumar Videm, Petera Melanie, Pietro Mandreoli, Pratik D. Jagtap, Qiang Gu, Ralf J. M. Weber, Ross Lazarus, Ruben H. P. Vorderman, Saskia D. Hiltemann, Sergey Golitsynskiy, Shilpa Garg, Simon A. Bray, Simon L. Gladman, Simone Leo, Subina P. Mehta, Timothy J. Griffin, Vahid Jalili, Yves Vandenbrouck, Victor Wen, Vijay K. Nagampalli, Wendi A. Bacon, Willem L. De Koning, Wolfgang Maier, Peter J. Briggs

Nucleic Acids Res., 2022

2021

Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine.

Qiang Gu, Anup Kumar, Simon Bray, Allison Creason, Alireza Khanteymoori, Vahid Jalili, Björn A. Grüning, Jeremy Goecks

PLoS Comput. Biol., 2021

2020

G-OnRamp: Generating genome browsers to facilitate undergraduate-driven collaborative genome annotation.

Luke Sargent, Yating Liu, Wilson Leung, Nathan T. Mortimer, David Lopatto, Jeremy Goecks, Sarah C. R. Elgin

PLoS Comput. Biol., 2020

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.

Vahid Jalili, Enis Afgan, Qiang Gu, Dave Clements, Daniel J. Blankenberg, Jeremy Goecks, James Taylor, Anton Nekrutenko

Nucleic Acids Res., 2020

Cloud bursting galaxy: federated identity and access management.

Vahid Jalili, Enis Afgan, James Taylor, Jeremy Goecks

Bioinform., 2020

2019

Next Generation Indexing for Genomic Intervals.

Vahid Jalili, Matteo Matteucci, Jeremy Goecks, Yashar Deldjoo, Stefano Ceri

IEEE Trans. Knowl. Data Eng., 2019

G-OnRamp: a Galaxy-based platform for collaborative annotation of eukaryotic genomes.

Yating Liu, Luke Sargent, Wilson Leung, Sarah C. R. Elgin, Jeremy Goecks

Bioinform., 2019

2018

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.

Enis Afgan, Dannon Baker, Bérénice Batut, Marius van den Beek, Dave Bouvier, Martin Cech, John Chilton, Dave Clements, Nate Coraor, Björn A. Grüning, Aysam Guerler, Jennifer Hillman-Jackson, Saskia D. Hiltemann, Vahid Jalili, Helena Rasche, Nicola Soranzo, Jeremy Goecks, James Taylor, Anton Nekrutenko, Daniel J. Blankenberg

Nucleic Acids Res., 2018

Federated Galaxy: Biomedical Computing at the Frontier.

Enis Afgan, Vahid Jalili, Nuwan Goonasekera, James Taylor, Jeremy Goecks

Proceedings of the 11th IEEE International Conference on Cloud Computing, 2018

2016

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.

Enis Afgan, Dannon Baker, Marius van den Beek, Daniel J. Blankenberg, Dave Bouvier, Martin Cech, John Chilton, Dave Clements, Nate Coraor, Carl Eberhard, Björn A. Grüning, Aysam Guerler, Jennifer Hillman-Jackson, Gregory Von Kuster, Eric Rasche, Nicola Soranzo, Nitesh Turaga, James Taylor, Anton Nekrutenko, Jeremy Goecks

Nucleic Acids Res., 2016

2015

A Quick Guide for Building a Successful Bioinformatics Community.

Aidan Budd, Manuel Corpas, Michelle D. Brazas, Jonathan C. Fuller, Jeremy Goecks, Nicola J. Mulder, Magali Michaut, B. F. Francis Ouellette, Aleksandra Pawlik, Niklas Blomberg

PLoS Comput. Biol., 2015

The Bioinformatics Open Source Conference (BOSC) 2013.

Nomi L. Harris, Peter J. A. Cock, Brad A. Chapman, Jeremy Goecks, Hans-Rudolf Hotz, Hilmar Lapp

Bioinform., 2015

2012

Lessons learned from Galaxy, a Web-based platform for high-throughput genomic analyses.

Jeremy Goecks, The Galaxy Team, Anton Nekrutenko, James Taylor

Proceedings of the 8th IEEE International Conference on E-Science, 2012

2011

Galaxy: A Gateway to Tools in e-Science.

Enis Afgan, Jeremy Goecks, Dannon Baker, Nate Coraor, Anton Nekrutenko, James Taylor

Proceedings of the Guide to e-Science, Next Generation Scientific Research and Discovery, 2011

The Galaxy Track Browser: Transforming the genome browser from visualization tool to analysis tool.

Jeremy Goecks, Kanwei Li, Dave Clements, The Galaxy Team, James Taylor

Proceedings of the 2011 IEEE Symposium on Biological Data Visualization, 2011

2009

Challenges in supporting end-user privacy and security management with social navigation.

Jeremy Goecks, W. Keith Edwards, Elizabeth D. Mynatt

Proceedings of the 5th Symposium on Usable Privacy and Security, 2009

2008

Charitable technologies: opportunities for collaborative computing in nonprofit fundraising.

Jeremy Goecks, Amy Voida, Stephen Voida, Elizabeth D. Mynatt

Proceedings of the 2008 ACM Conference on Computer Supported Cooperative Work, 2008

2004

Leveraging social networks for information sharing.

Jeremy Goecks, Elizabeth D. Mynatt

Proceedings of the 2004 ACM Conference on Computer Supported Cooperative Work, 2004

2002

Augmenting shared personal calendars.

Joe Tullio, Jeremy Goecks, Elizabeth D. Mynatt, David H. Nguyen

Proceedings of the 15th Annual ACM Symposium on User Interface Software and Technology, 2002

NuggetMine: intelligent groupware for opportunistically sharing information nuggets.

Jeremy Goecks, Dan Cosley

Proceedings of the 7th International Conference on Intelligent User Interfaces, 2002

2000

Learning users' interests by unobtrusively observing their normal behavior.

Jeremy Goecks, Jude W. Shavlik

Proceedings of the 5th International Conference on Intelligent User Interfaces, 2000