Jens Allmer
Orcid: 0000-0002-2164-7335Affiliations:
- Izmir Institute of Technology, Urla, Izmir, Turkey
According to our database1,
Jens Allmer
authored at least 30 papers
between 2008 and 2023.
Collaborative distances:
Collaborative distances:
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Bibliography
2023
PriPath: identifying dysregulated pathways from differential gene expression via grouping, scoring, and modeling with an embedded feature selection approach.
BMC Bioinform., December, 2023
Community-wide collaboration is a must to reinstall trust in bioinformatics solutions and biomedical interpretation.
J. Integr. Bioinform., March, 2023
2021
J. Integr. Bioinform., 2021
Special issue on COVID-19 data integration opportunities and vaccine development strategies.
J. Integr. Bioinform., 2021
Classification of Precursor MicroRNAs from Different Species Based on K-mer Distance Features.
Algorithms, 2021
2020
A Machine Learning-based Approach for the Categorization of MicroRNAs to Their Species of Origin.
Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020), 2020
2019
Bioinform., 2019
Classification of Pre-cursor microRNAs from Different Species Using a New Set of Features.
Proceedings of the Database and Expert Systems Applications, 2019
2018
Visualization and Analysis of miRNAs Implicated in Amyotrophic Lateral Sclerosis Within Gene Regulatory Pathways.
Proceedings of the German Medical Data Sciences: A Learning Healthcare System, 2018
Species Categorization via MicroRNAs - Based on 3'UTR Target Sites using Sequence Features.
Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2018), 2018
2017
J. Integr. Bioinform., 2017
Improving the Quality of Positive Datasets for the Establishment of Machine Learning Models for pre-microRNA Detection.
J. Integr. Bioinform., 2017
PGMiner: Complete proteogenomics workflow; from data acquisition to result visualization.
Inf. Sci., 2017
Categorization of species based on their microRNAs employing sequence motifs, information-theoretic sequence feature extraction, and <i>k</i>-mers.
EURASIP J. Adv. Signal Process., 2017
AltORFev facilitates the prediction of alternative open reading frames in eukaryotic mRNAs.
Bioinform., 2017
Distinguishing between MicroRNA Targets from Diverse Species using Sequence Motifs and K-mers.
Proceedings of the 10th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2017), 2017
2016
PeerJ Prepr., 2016
PGMiner reloaded, fully automated proteogenomic annotation tool linking genomes to proteomes.
J. Integr. Bioinform., 2016
A Machine Learning Approach for MicroRNA Precursor Prediction in Retro-transcribing Virus Genomes.
J. Integr. Bioinform., 2016
Feature Selection Has a Large Impact on One-Class Classification Accuracy for MicroRNAs in Plants.
Adv. Bioinformatics, 2016
Feature Selection for MicroRNA Target Prediction - Comparison of One-Class Feature Selection Methodologies.
Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016), 2016
2014
Computational Prediction of MicroRNAs from Toxoplasma gondii Potentially Regulating the Hosts' Gene Expression.
Genom. Proteom. Bioinform., 2014
2013
Can MiRBase Provide Positive Data for Machine Learning for the Detection of MiRNA Hairpins?
J. Integr. Bioinform., 2013
Comparison of Four Ab Initio MicroRNA Prediction Tools.
Proceedings of the BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11, 2013
2008
2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments.
BMC Bioinform., 2008