Jennifer L. Reed

According to our database, Jennifer L. Reed authored at least 19 papers between 2007 and 2020.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2020

Model-driven analysis of mutant fitness experiments improves genome-scale metabolic models of Zymomonas mobilis ZM4.

Wai Kit Ong, Dylan K. Courtney, Shu Pan, Ramon Bonela Andrade, Patricia J. Kiley, Brian F. Pfleger, Jennifer L. Reed

PLoS Comput. Biol., 2020

Workflow Analysis Driven Recommendations for Integration of Electronically-Enhanced Sexually Transmitted Infection Screening Tools in Pediatric Emergency Departments.

Jessica L. Howe, Jennifer L. Reed, Katharine T. Adams, Cara Elsholz, Erin M. Augustine, Andrea T. Cruz, Cynthia Mollen, Michelle L. Pickett, Sara Schmidt, Kristin Stukus, Raj M. Ratwani, Monika K. Goyal

J. Medical Syst., 2020

2018

Integrating proteomic or transcriptomic data into metabolic models using linear bound flux balance analysis.

Mingyuan Tian, Jennifer L. Reed

Bioinform., 2018

2017

Improving flux predictions by integrating data from multiple strains.

Matthew R. Long, Jennifer L. Reed

Bioinform., 2017

2015

Thermodynamics and H₂ Transfer in a Methanogenic, Syntrophic Community.

Joshua J. Hamilton, Montserrat Calixto Contreras, Jennifer L. Reed

PLoS Comput. Biol., 2015

2014

Comparisons of Shewanella strains based on genome annotations, modeling, and experiments.

Wai Ong, Trang T. Vu, Klaus N. Lovendahl, Jenna M. Llull, Margrethe H. Serres, Margaret F. Romine, Jennifer L. Reed

BMC Syst. Biol., 2014

2013

Inferring ancient metabolism using ancestral core metabolic models of enterobacteria.

David J. Baumler, Bing Ma, Jennifer L. Reed, Nicole T. Perna

BMC Syst. Biol., 2013

Mechanistic analysis of multi-omics datasets to generate kinetic parameters for constraint-based metabolic models.

Cameron Cotten, Jennifer L. Reed

BMC Bioinform., 2013

2012

Genome-Scale Modeling of Light-Driven Reductant Partitioning and Carbon Fluxes in Diazotrophic Unicellular Cyanobacterium <i>Cyanothece</i> sp. ATCC 51142.

Trang T. Vu, Sergey M. Stolyar, Grigoriy E. Pinchuk, Eric A. Hill, Leo A. Kucek, Roslyn N. Brown, Mary S. Lipton, Andrei Osterman, Jim K. Fredrickson, Allan E. Konopka, Alexander S. Beliaev, Jennifer L. Reed

PLoS Comput. Biol., 2012

Shrinking the Metabolic Solution Space Using Experimental Datasets.

Jennifer L. Reed

PLoS Comput. Biol., 2012

Predicting outcomes of steady-state ¹³C isotope tracing experiments using Monte Carlo sampling.

Jan Schellenberger, Daniel C. Zielinski, Wing Choi, Sunthosh Madireddi, Vasiliy Portnoy, David A. Scott, Jennifer L. Reed, Andrei Osterman, Bernhard Ø. Palsson

BMC Syst. Biol., 2012

2011

A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2.

Ines Thiele, Daniel R. Hyduke, Benjamin Steeb, Guy Fankam, Douglas K. Allen, Susanna Bazzani, Pep Charusanti, Feng-Chi Chen, Ronan M. T. Fleming, Chao A. Hsiung, Sigrid C. J. De Keersmaecker, Yu-Chieh Liao, Kathleen Marchal, Monica L. Mo, Emre Özdemir, Anu Raghunathan, Jennifer L. Reed, Sook-Il Shin, Sara Sigurbjörnsdóttir, Jonas Steinmann, Suresh Sudarsan, Neil Swainston, Inge M. Thijs, Karsten Zengler, Bernhard O. Palsson, Joshua N. Adkins, Dirk Bumann

BMC Syst. Biol., 2011

iRsp1095: A genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network.

Saheed Imam, Safak Yilmaz, Ugur Sohmen, Alexander S. Gorzalski, Jennifer L. Reed, Daniel R. Noguera, Timothy J. Donohue

BMC Syst. Biol., 2011

The evolution of metabolic networks of E. coli.

David J. Baumler, Roman G. Peplinski, Jennifer L. Reed, Jeremy D. Glasner, Nicole T. Perna

BMC Syst. Biol., 2011

2010

Constraint-Based Model of <i>Shewanella oneidensis</i> MR-1 Metabolism: A Tool for Data Analysis and Hypothesis Generation.

Grigoriy E. Pinchuk, Eric A. Hill, Oleg V. Geydebrekht, Jessica De Ingeniis, Xiaolin Zhang, Andrei Osterman, James H. Scott, Samantha B. Reed, Margaret F. Romine, Allan E. Konopka, Alexander S. Beliaev, Jim K. Fredrickson, Jennifer L. Reed

PLoS Comput. Biol., 2010

An Automated Phenotype-Driven Approach (<i>Gene</i>Force) for Refining Metabolic and Regulatory Models.

Dipak Barua, Joonhoon Kim, Jennifer L. Reed

PLoS Comput. Biol., 2010

OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains.

Joonhoon Kim, Jennifer L. Reed

BMC Syst. Biol., 2010

2009

Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction.

Anu Raghunathan, Jennifer L. Reed, Sook-Il Shin, Bernhard Ø. Palsson, Simon Daefler

BMC Syst. Biol., 2009

2007

Metabolic Reconstruction and Modeling of Nitrogen Fixation in <i>Rhizobium etli</i>.

Osbaldo Resendis-Antonio, Jennifer L. Reed, Sergio Encarnación, Julio Collado-Vides, Bernhard Ø. Palsson

PLoS Comput. Biol., 2007