Jennifer Hallinan

Orcid: 0000-0002-2860-1022

Affiliations:
  • Macquarie University, Sydney, Australia
  • Newcastle University, UK


According to our database1, Jennifer Hallinan authored at least 44 papers between 1998 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
GRAMP: A gene ranking and model prioritisation framework for building consensus genetic networks.
Knowl. Based Syst., 2024

2023
Knowledge-Based Intelligent Text Simplification for Biological Relation Extraction.
Informatics, 2023

A Robust Ensemble Regression Model for Reconstructing Genetic Networks.
Proceedings of the International Joint Conference on Neural Networks, 2023

2022
Modelling the fitness landscapes of a SCRaMbLEd yeast genome.
Biosyst., 2022

Combining kinetic orders for efficient S-System modelling of gene regulatory network.
Biosyst., 2022

Filter feature selection based Boolean Modelling for Genetic Network Inference.
Biosyst., 2022

Computational intelligence and machine learning in bioinformatics and computational biology.
Biosyst., 2022

Integrating steady-state and dynamic gene expression data for improving genetic network modelling.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2022

Ensemble Regression Modelling for Genetic Network Inference.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2022

2021
Dynamically Regulated Initialization for S-system Modelling of Genetic Networks.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2021

An Efficient Boolean Modelling Approach for Genetic Network Inference.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2021

2016
Engineering bacterial populations for pattern formation.
Proceedings of the 2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2016

Computational intelligence for metabolic pathway design: Application to the pentose phosphate pathway.
Proceedings of the 2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2016

2014
Probabilistic Latent Semantic Analysis Applied to Whole Bacterial Genomes Identifies Common Genomic Features.
J. Integr. Bioinform., 2014

BacillusRegNet: A transcriptional regulation database and analysis platform for Bacillus species.
J. Integr. Bioinform., 2014

A distributed computational search strategy for the identification of diagnostics targets: Application to finding aptamer targets for methicillin-resistant staphylococci.
J. Integr. Bioinform., 2014

Composable Modular Models for Synthetic Biology.
ACM J. Emerg. Technol. Comput. Syst., 2014

Tuning receiver characteristics in bacterial quorum communication: An evolutionary approach using standard virtual biological parts.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2014

2013
BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology.
J. Integr. Bioinform., 2013

2012
Microbase2.0: A Generic Framework for Computationally Intensive Bioinformatics Workflows in the Cloud.
J. Integr. Bioinform., 2012

Bayesian integration of networks without gold standards.
Bioinform., 2012

Bridging the Gap between Design and Reality - A Dual Evolutionary Strategy for the Design of Synthetic Genetic Circuits.
Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012

2011
Customizable views on semantically integrated networks for systems biology.
Bioinform., 2011

Model annotation for synthetic biology: automating model to nucleotide sequence conversion.
Bioinform., 2011

2010
Standard virtual biological parts: a repository of modular modeling components for synthetic biology.
Bioinform., 2010

2009
Evolving gene regulatory networks.
Biosyst., 2009

Integration of Full-Coverage Probabilistic Functional Networks with Relevance to Specific Biological Processes.
Proceedings of the Data Integration in the Life Sciences, 6th International Workshop, 2009

Clustering incorporating shortest paths identifies relevant modules in functional interaction networks.
Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2009

2008
Network motifs in context: An exploration of the evolution of oscillatory dynamics in transcriptional networks.
Proceedings of the 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2008

2007
Motifs and Modules in Fractured Functional Yeast Networks.
Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007

2006
Clustering and Cross-talk in a Yeast Functional Interaction Network.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

Effects of Constitutive Gene Expression on the Dynamics of Random Boolean Networks.
Proceedings of the IEEE International Conference on Evolutionary Computation, 2006

Effects of an RNA control layer on the state space of Boolean models of genetic regulatory networks.
Proceedings of the IEEE International Conference on Evolutionary Computation, 2006

2005
Evolving Neural Networks for the Classification of Malignancy Associated Changes.
Proceedings of the Intelligent Data Engineering and Automated Learning, 2005

There's more to a model than code: understanding and formalizing <i>in silico</i> modeling experience.
Proceedings of the Genetic and Evolutionary Computation Conference, 2005

Network Motifs, Feedback Loops and the Dynamics of Genetic Regulatory Networks.
Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

2004
Cluster analysis of the p53 genetic regulatory network: topology and biology.
Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2004

Evolving Genetic Regulatory Networks Using an Artificial Genome.
Proceedings of the Second Asia-Pacific Bioinformatics Conference (APBC 2004), 2004

2003
Self-Organization Leads to Hierarchical Modularity in an Internet Community.
Proceedings of the Knowledge-Based Intelligent Information and Engineering Systems, 2003

2002
A comparison of neutral landscapes - NK, NKp and NKq.
Proceedings of the 2002 Congress on Evolutionary Computation, 2002

2001
Guest editorial - evolutionary computation and cognitive science: modeling evolution and evolving models.
IEEE Trans. Evol. Comput., 2001

2000
Detection of malignancy associated changes in cervical cells using statistical and evolutionary computation techniques
PhD thesis, 2000

Modeling the spread of antibiotic resistance.
Proceedings of the 2000 Congress on Evolutionary Computation, 2000

1998
Co-operative Evolution of a Neural Classifier and Feature Subset.
Proceedings of the Simulated Evolution and Learning, 1998


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