Jennifer A. Doherty

According to our database, Jennifer A. Doherty authored at least 15 papers between 2018 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Development of message passing-based graph convolutional networks for classifying cancer pathology reports.

Hong-Jun Yoon, Hilda B. Klasky, Andrew E. Blanchard, James Blair Christian, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi

BMC Medical Informatics Decis. Mak., December, 2024

Deep learning uncertainty quantification for clinical text classification.

Alina Peluso, Ioana Danciu, Hong-Jun Yoon, Jamaludin Mohd-Yusof, Tanmoy Bhattacharya, Adam Spannaus, Noah Schaefferkoetter, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Stephen M. Schwartz, Charles Wiggins, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi, Shang Gao

J. Biomed. Informatics, January, 2024

2022

A Keyword-Enhanced Approach to Handle Class Imbalance in Clinical Text Classification.

Andrew E. Blanchard, Shang Gao, Hong-Jun Yoon, James Blair Christian, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Stephen M. Schwartz, Charles Wiggins, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi

IEEE J. Biomed. Health Informatics, 2022

Class imbalance in out-of-distribution datasets: Improving the robustness of the TextCNN for the classification of rare cancer types.

Kevin De Angeli, Shang Gao, Ioana Danciu, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Stephen M. Schwartz, Charles Wiggins, Mark Damesyn, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi, Hong-Jun Yoon

J. Biomed. Informatics, 2022

Iam hiQ - a novel pair of accuracy indices for imputed genotypes.

Albert Rosenberger, Viola Tozzi, Heike Bickeböller, Rayjean J. Hung, David C. Christiani, Neil E. Caporaso, Geoffrey Liu, Stig E. Bojesen, Loic Le Marchand, Demetrios Albanes, Melinda C. Aldrich, Adonina Tardon, Guillermo Fernández-Tardón, Gad Rennert, John K. Field, Mike Davies, Triantafillos Liloglou, Lambertus A. Kiemeney, Philip Lazarus, Aage Haugen, Shanbeh Zienolddiny, Stephen Lam, Matthew B. Schabath, Angeline S. Andrew, Eric J. Duell, Susanne M. Arnold, Hans Brunnström, Olle Melander, Gary E. Goodman, Chu Chen, Jennifer A. Doherty, Marion Dawn Teare, Angela Cox, Penella J. Woll, Angela Risch, Thomas R. Muley, Mikael Johansson, Paul Brennan, Maria Teresa Landi, Sanjay Shete, Christopher I. Amos

BMC Bioinform., 2022

2021

Limitations of Transformers on Clinical Text Classification.

Shang Gao, Mohammed M. Alawad, M. Todd Young, John Gounley, Noah Schaefferkoetter, Hong-Jun Yoon, Xiao-Cheng Wu, Eric B. Durbin, Jennifer A. Doherty, Antoinette Stroup, Linda Coyle, Georgia D. Tourassi

IEEE J. Biomed. Health Informatics, 2021

miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data.

Ariel A. Hippen, Matias M. Falco, Lukas M. Weber, Erdogan Pekcan Erkan, Kaiyang Zhang, Jennifer Anne Doherty, Anna Vähärautio, Casey S. Greene, Stephanie C. Hicks

PLoS Comput. Biol., 2021

Integration of Domain Knowledge using Medical Knowledge Graph Deep Learning for Cancer Phenotyping.

Mohammed M. Alawad, Shang Gao, Mayanka Chandra Shekar, S. M. Shamimul Hasan, James Blair Christian, Xiao-Cheng Wu, Eric B. Durbin, Jennifer A. Doherty, Antoinette Stroup, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi

CoRR, 2021

Deep active learning for classifying cancer pathology reports.

Kevin De Angeli, Shang Gao, Mohammed M. Alawad, Hong-Jun Yoon, Noah Schaefferkoetter, Xiao-Cheng Wu, Eric B. Durbin, Jennifer A. Doherty, Antoinette Stroup, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi

BMC Bioinform., 2021

2020

Accelerated training of bootstrap aggregation-based deep information extraction systems from cancer pathology reports.

Hong-Jun Yoon, Hilda B. Klasky, John P. Gounley, Mohammed M. Alawad, Shang Gao, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Linda Coyle, Lynne Penberthy, James Blair Christian, Georgia D. Tourassi

J. Biomed. Informatics, 2020

Why I'm not Answering: Understanding Determinants of Classification of an Abstaining Classifier for Cancer Pathology Reports.

Sayera Dhaubhadel, Jamaludin Mohd-Yusof, Kumkum Ganguly, Gopinath Chennupati, Sunil Thulasidasan, Nicolas W. Hengartner, Brent J. Mumphrey, Eric B. Durbin, Jennifer A. Doherty, Mireille Lemieux, Noah Schaefferkoetter, Georgia D. Tourassi, Linda Coyle, Lynne Penberthy, Benjamin McMahon, Tanmoy Bhattacharya

CoRR, 2020

Privacy-Preserving Knowledge Transfer with Bootstrap Aggregation of Teacher Ensembles.

Hong-Jun Yoon, Hilda B. Klasky, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Linda Coyle, Lynne Penberthy, Christopher B. Stanley, James Blair Christian, Georgia D. Tourassi

Proceedings of the Heterogeneous Data Management, Polystores, and Analytics for Healthcare, 2020

2019

Assessing data availability and quality within an electronic health record system through external validation against an external clinical data source.

Ellen L. Palmer, John H. Higgins, Saeed Hassanpour, James Sargent, Christina M. Robinson, Jennifer A. Doherty, Tracy Onega

BMC Medical Informatics Decis. Mak., 2019

Building a tobacco user registry by extracting multiple smoking behaviors from clinical notes.

Ellen L. Palmer, Saeed Hassanpour, John H. Higgins, Jennifer A. Doherty, Tracy Onega

BMC Medical Informatics Decis. Mak., 2019

2018

Functional network community detection can disaggregate and filter multiple underlying pathways in enrichment analyses.

Lia X. Harrington, Gregory P. Way, Jennifer A. Doherty, Casey S. Greene

Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018