Jeffrey T. Leek

According to our database, Jeffrey T. Leek authored at least 31 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

From Narratives to Numbers: Valid Inference Using Language Model Predictions from Verbal Autopsy Narratives.

Shuxian Fan, Adam Visokay, Kentaro Hoffman, Stephen Salerno, Li Liu, Jeffrey T. Leek, Tyler H. McCormick

CoRR, 2024

Do We Really Even Need Data?

Kentaro Hoffman, Stephen Salerno, Awan Afiaz, Jeffrey T. Leek, Tyler H. McCormick

CoRR, 2024

2023

Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?

Awan Afiaz, Andrey Ivanov, John Chamberlin, David Hanauer, Candace Savonen, Mary J. Goldman, Martin Morgan, Michael Reich, Alexander Getka, Aaron Holmes, Sarthak Pati, Dan Knight, Paul C. Boutros, Spyridon Bakas, J. Gregory Caporaso, Guilherme Del Fiol, Harry Hochheiser, Brian Haas, Patrick D. Schloss, James A. Eddy, Jake Albrecht, Andrey Fedorov, Levi Waldron, Ava M. Hoffman, Richard L. Bradshaw, Jeffrey T. Leek, Carrie Wright

CoRR, 2023

Motivation, inclusivity, and realism should drive data science education.

Candace Savonen, Carrie Wright, Ava M. Hoffman, Elizabeth M. Humphries, Katherine E. L. Cox, Frederick J. Tan, Jeffrey T. Leek

CoRR, 2023

2022

Open-source Tools for Training Resources - OTTR.

Candace Savonen, Carrie Wright, Ava M. Hoffman, John Muschelli, Katherine E. L. Cox, Frederick J. Tan, Jeffrey T. Leek

CoRR, 2022

Diversifying the Genomic Data Science Research Community.

Rosa Alcazar, Maria Alvarez, Rachel Arnold, Mentewab Ayalew, Lyle G. Best, Michael C. Campbell, Kamal Chowdhury, Katherine E. L. Cox, Christina Daulton, Youping Deng, Carla Easter, Karla Fuller, Shazia Tabassum Hakim, Ava M. Hoffman, Natalie Kucher, Andrew Lee, Joslynn Lee, Jeffrey T. Leek, Robert Meller, Loyda B. Méndez, Miguel P. Méndez-González, Stephen Mosher, Michele Nishiguchi, Siddharth Pratap, Tiffany Rolle, Sourav Roy, Rachel Saidi, Michael C. Schatz, Shurjo Sen, James Sniezek, Edu Suarez Martinez, Frederick Tan, Jennifer Vessio, Karriem Watson, Wendy Westbroek, Joseph Wilcox, Xianfa Xie

CoRR, 2022

2021

Linking open-source code commits and MOOC grades to evaluate massive online open peer review.

Siruo Wang, Leah R. Jager, Kai Kammers, Aboozar Hadavand, Jeffrey T. Leek

CoRR, 2021

2020

Tools for Analyzing R Code the Tidy Way.

Lucy D'Agostino McGowan, Sean Kross, Jeffrey T. Leek

R J., 2020

ari: The Automated R Instructor.

Sean Kross, Jeffrey T. Leek, John Muschelli

R J., 2020

2019

Analysis of Student Behavior Using the R Package crsra.

Aboozar Hadavand, John Muschelli, Jeffrey T. Leek

J. Learn. Anal., July, 2019

2017

Rail-RNA: scalable analysis of RNA-seq splicing and coverage.

Abhinav Nellore, Leonardo Collado-Torres, Andrew E. Jaffe, José Alquicira-Hernández, Christopher Wilks, Jacob Pritt, James Morton, Jeffrey T. Leek, Ben Langmead

Bioinform., 2017

2016

Erratum to: Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis.

Andrew E. Jaffe, Thomas Hyde, Joel Kleinman, Daniel R. Weinberger, Joshua Chenoweth, Ronald McKay, Jeffrey T. Leek, Carlo Colantuoni

BMC Bioinform., 2016

Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce.

Abhinav Nellore, Christopher Wilks, Kasper D. Hansen, Jeffrey T. Leek, Ben Langmead

Bioinform., 2016

BatchQC: interactive software for evaluating sample and batch effects in genomic data.

Solaiappan Manimaran, Heather Marie Selby, Kwame Okrah, Claire Ruberman, Jeffrey T. Leek, John Quackenbush, Benjamin Haibe-Kains, Héctor Corrada Bravo, W. Evan Johnson

Bioinform., 2016

2015

Discussion of "visualizing statistical models: Removing the blindfold".

Prasad Patil, Jeffrey T. Leek

Stat. Anal. Data Min., 2015

Statistics: <i>P</i> values are just the tip of the iceberg.

Jeffrey T. Leek, Roger D. Peng

Nat., 2015

regionReport: Interactive reports for region-based analyses.

Leonardo Collado-Torres, Andrew E. Jaffe, Jeffrey T. Leek

F1000Research, 2015

Reproducible Research Can Still Be Wrong: Adopting a Prevention Approach.

Jeffrey T. Leek, Roger D. Peng

CoRR, 2015

Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis.

Andrew E. Jaffe, Thomas Hyde, Joel Kleinman, Daniel Weinbergern, Joshua Chenoweth, Ronald McKay, Jeffrey T. Leek, Carlo Colantuoni

BMC Bioinform., 2015

Test set bias affects reproducibility of gene signatures.

Prasad Patil, Pierre-Olivier Bachant-Winner, Benjamin Haibe-Kains, Jeffrey T. Leek

Bioinform., 2015

<i>Polyester</i>: simulating RNA-seq datasets with differential transcript expression.

Alyssa C. Frazee, Andrew E. Jaffe, Ben Langmead, Jeffrey T. Leek

Bioinform., 2015

2014

Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction.

Hilary S. Parker, Jeffrey T. Leek, Alexander V. Favorov, Michael Considine, Xiaoxin Xia, Sameer Chavan, Christine H. Chung, Elana J. Fertig

Bioinform., 2014

2013

SVAw - a web-based application tool for automated surrogate variable analysis of gene expression studies.

Mehdi Pirooznia, Fayaz Seifuddin, Fernando S. Goes, Jeffrey T. Leek, Peter P. Zandi

Source Code Biol. Medicine, 2013

Gene set bagging for estimating the probability a statistically significant result will replicate.

Andrew E. Jaffe, John D. Storey, Hongkai Ji, Jeffrey T. Leek

BMC Bioinform., 2013

2012

A statistical approach to selecting and confirming validation targets in -omics experiments.

Jeffrey T. Leek, Margaret Taub, Jason L. Rasgon

BMC Bioinform., 2012

Gene expression anti-profiles as a basis for accurate universal cancer signatures.

Héctor Corrada Bravo, Vasyl Pihur, Matthew N. McCall, Rafael A. Irizarry, Jeffrey T. Leek

BMC Bioinform., 2012

The sva package for removing batch effects and other unwanted variation in high-throughput experiments.

Jeffrey T. Leek, W. Evan Johnson, Hilary S. Parker, Andrew E. Jaffe, John D. Storey

Bioinform., 2012

2011

ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets.

Alyssa C. Frazee, Ben Langmead, Jeffrey T. Leek

BMC Bioinform., 2011

A computationally efficient modular optimal discovery procedure.

Sangsoon Woo, Jeffrey T. Leek, John D. Storey

Bioinform., 2011

2009

The <tt>tspair</tt> package for finding top scoring pair classifiers in <tt>R</tt>.

Jeffrey T. Leek

Bioinform., 2009

2006

EDGE: extraction and analysis of differential gene expression.

Jeffrey T. Leek, Eva Monsen, Alan R. Dabney, John D. Storey

Bioinform., 2006