Jeffrey A. Ruffolo

According to our database, Jeffrey A. Ruffolo authored at least 7 papers between 2019 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Conditional Enzyme Generation Using Protein Language Models with Adapters.

Jason Yang, Aadyot Bhatnagar, Jeffrey A. Ruffolo, Ali Madani

CoRR, 2024

Towards Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion.

Alex Morehead, Jeffrey A. Ruffolo, Aadyot Bhatnagar, Ali Madani

CoRR, 2024

2022

Antibody structure prediction using interpretable deep learning.

Jeffrey A. Ruffolo, Jeremias Sulam, Jeffrey J. Gray

Patterns, 2022

ProGen2: Exploring the Boundaries of Protein Language Models.

Erik Nijkamp, Jeffrey A. Ruffolo, Eli N. Weinstein, Nikhil Naik, Ali Madani

CoRR, 2022

2021

Deciphering antibody affinity maturation with language models and weakly supervised learning.

Jeffrey A. Ruffolo, Jeffrey J. Gray, Jeremias Sulam

CoRR, 2021

2020

Geometric potentials from deep learning improve prediction of CDR H3 loop structures.

Jeffrey A. Ruffolo, Carlos Guerra, Sai Pooja Mahajan, Jeremias Sulam, Jeffrey J. Gray

Bioinform., 2020

2019

MUFold-Contact and TPCref: New Methods for Protein Structure Contact Prediction and Refinement.

Jeffrey A. Ruffolo, Zhaoyu Li, Yi Shang

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019