Jean-Pierre A. Kocher
Orcid: 0000-0002-0260-6773Affiliations:
- Mayo Clinic College of Medicine, Rochester, USA
According to our database1,
Jean-Pierre A. Kocher
authored at least 41 papers
between 2008 and 2024.
Collaborative distances:
Collaborative distances:
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on orcid.org
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Bibliography
2024
Characterization of telomere variant repeats using long reads enables allele-specific telomere length estimation.
BMC Bioinform., December, 2024
2022
Telogator: a method for reporting chromosome-specific telomere lengths from long reads.
Bioinform., 2022
2021
2020
Coverage Profile Correction of Shallow-Depth Circulating Cell-Free DNA Sequencing via Multi-Distance Learning.
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020
2018
Improving Single-Nucleotide Polymorphism-Based Fetal Fraction Estimation of Maternal Plasma Circulating Cell-Free DNA Using Bayesian Hierarchical Models.
J. Comput. Biol., 2018
BMC Bioinform., 2018
HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data.
BMC Bioinform., 2018
2017
mTCTScan: a comprehensive platform for annotation and prioritization of mutations affecting drug sensitivity in cancers.
Nucleic Acids Res., 2017
BMC Bioinform., 2017
Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations.
Briefings Bioinform., 2017
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
2016
GWASdb v2: an update database for human genetic variants identified by genome-wide association studies.
Nucleic Acids Res., 2016
Erratum to: Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature.
BMC Bioinform., 2016
CpGFilter: model-based CpG probe filtering with replicates for epigenome-wide association studies.
Bioinform., 2016
VCF-Miner: GUI-based application for mining variants and annotations stored in VCF files.
Briefings Bioinform., 2016
2015
Time course transcriptome data analysis for in vitro modeling of dilated cardiomyopathy using patient-derived induced pluripotent stem cells.
BMC Bioinform., December, 2015
Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature.
BMC Bioinform., 2015
Bioinform., 2015
glmgraph: an R package for variable selection and predictive modeling of structured genomic data.
Bioinform., 2015
Bioinformatics Strategies for Identifying Regions of Epigenetic Deregulation Associated with Aberrant Transcript Splicing and RNA-editing.
Proceedings of the BIOINFORMATICS 2015, 2015
2014
BMC Bioinform., 2014
Prioritizing disease-related genes and pathways by integrating patient-specific iPSC-derived RNA-seq and whole genome sequencing in hypoplastic left heart syndrome.
BMC Bioinform., 2014
Bioinform., 2014
PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data.
Bioinform., 2014
The Biological Reference Repository (BioR): a rapid and flexible system for genomics annotation.
Bioinform., 2014
2013
A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal component analysis.
Bioinform., 2013
Proceedings of the Advances in Biomedical Infrastructure 2013, 2013
2012
SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing.
Bioinform., 2012
TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data.
Bioinform., 2012
2011
Drug side effect extraction from clinical narratives of psychiatry and psychology patients.
J. Am. Medical Informatics Assoc., 2011
BMC Bioinform., 2011
2010
Spatial normalization improves the quality of genotype calling for Affymetrix SNP 6.0 arrays.
BMC Bioinform., 2010
2009
GLOSSI: a method to assess the association of genetic loci-sets with complex diseases.
BMC Bioinform., 2009
2008
Bioinform., 2008
Learning on Weighted Hypergraphs to Integrate Protein Interactions and Gene Expressions for Cancer Outcome Prediction.
Proceedings of the 8th IEEE International Conference on Data Mining (ICDM 2008), 2008