Jean Gao

Orcid: 0000-0002-9077-7803

Affiliations:
  • University of Texas at Arlington, USA


According to our database1, Jean Gao authored at least 128 papers between 1998 and 2024.

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Bibliography

2024
AlphaEpi: Enhancing B Cell Epitope Prediction with AlphaFold 3.
Proceedings of the 15th ACM International Conference on Bioinformatics, 2024

MFMF: Multiple Foundation Model Fusion Networks for Whole Slide Image Classification.
Proceedings of the 15th ACM International Conference on Bioinformatics, 2024

2023
Integrating Heterogeneous Biological Networks and Ontologies for Improved Protein Function Prediction with Graph Neural Networks.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022
Causal Discovery in Biological Data Using Directed Topological Overlap Matrix.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021
Deep Fusion of Brain Structure-Function in Mild Cognitive Impairment.
Medical Image Anal., 2021

OpenOmics: A bioinformatics API to integrate multi-omics datasets and interface with public databases.
J. Open Source Softw., 2021

2020
Layer-stacked Attention for Heterogeneous Network Embedding.
CoRR, 2020

Network Representation of Large-Scale Heterogeneous RNA Sequences with Integration of DiverseMulti-omics, Interactions, and Annotations Data.
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

Causal Gene Selection Using Marginal Independencies.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019
Robust Inductive Matrix Completion Strategy to Explore Associations Between LincRNAs and Human Disease Phenotypes.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

rna2rna: Predicting lncRNA-microRNA-mRNA Interactions from Sequence with Integration of Interactome and Biological Annotation Data.
CoRR, 2019

Solving All Regression Models For Learning Gaussian Networks Using Givens Rotations.
CoRR, 2019

Semi-Supervised Discriminative Transfer Learning in Cross-Language Text Classification.
Proceedings of the 18th IEEE International Conference On Machine Learning And Applications, 2019

The Effect of Integration Stage on Multimodal Deep Learning in Genomic Studies.
Proceedings of the Communications, Signal Processing, and Systems, 2019

Integrative Feature Ranking by Applying Deep Learning on Multi Source Genomic Data.
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018
Renormalized Normalized Maximum Likelihood and Three-Part Code Criteria For Learning Gaussian Networks.
CoRR, 2018

MicroRNA dysregulational synergistic network: discovering microRNA dysregulatory modules across subtypes in non-small cell lung cancers.
BMC Bioinform., 2018

Integrating Heterogeneous Datasets by Using Multimodal Deep Learning.
Proceedings of the Communications, Signal Processing, and Systems, 2018

2017
Multi-Block Bipartite Graph for Integrative Genomic Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Cascade Classification with Adaptive Feature Extraction for Arrhythmia Detection.
J. Medical Syst., 2017

Effects of low dose ionizing radiation on DNA damage-caused pathways by reverse-phase protein array and Bayesian networks.
J. Bioinform. Comput. Biol., 2017

Integration of multi-omics data for integrative gene regulatory network inference.
Int. J. Data Min. Bioinform., 2017

Nonlinear-RANSAC parameter optimisation for dynamic molecular systems and signalling pathways.
Int. J. Data Min. Bioinform., 2017

Identifying cis/trans-acting expression quantitative trait loci (eQTL).
Int. J. Data Min. Bioinform., 2017

Improved microRNA biomarkers for pathological stages in lung adenocarcinoma via clustering of dysregulated microRNA-target associations.
Proceedings of the 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2017

Identification of Direction of Time in Vector Autoregressive Systems Using PC Algorithm.
Proceedings of the Communications, Signal Processing, and Systems, 2017

MicroRNA dysregulational synergistic network: Learning context-specific MicroRNA dysregulations in lung cancer subtypes.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

LiDiAimc: LincRNA-disease associations through inductive matrix completion.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
PR2S2Clust: Patched RNA-seq read segments' structure-oriented clustering.
J. Bioinform. Comput. Biol., 2016

Computational modeling of phagocyte transmigration for foreign body responses to subcutaneous biomaterial implants in mice.
BMC Bioinform., 2016

Integrative Gene Regulatory Network inference using multi-omics data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Is EEG causal to fNIRs?
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
Inferring disease associations of the long non-coding RNAs through non-negative matrix factorization.
Netw. Model. Anal. Health Informatics Bioinform., 2015

Probabilistic partial least squares regression for quantitative analysis of Raman spectra.
Int. J. Data Min. Bioinform., 2015

Editorial on: BioMedical Engineering & Informatics.
Comput. Biol. Medicine, 2015

eQTL epistasis: detecting epistatic effects and inferring hierarchical relationships of genes in biological pathways.
Bioinform., 2015

Flood Prediction and Mining Influential Spatial Features on Future Flood with Causal Discovery.
Proceedings of the IEEE International Conference on Data Mining Workshop, 2015

Integrative approach for inference of gene regulatory networks using lasso-based random featuring and application to Psychiatric disorders.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

An integrative genomic study for multimodal genomic data using multi-block bipartite graph.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
Models and Methods for Quantitative Analysis of Surface-Enhanced Raman Spectra.
IEEE J. Biomed. Health Informatics, 2014

Guest Editorial: Data Mining in Bioinformatics, Biomedicine, and Healthcare Informatics.
IEEE J. Biomed. Health Informatics, 2014

iSPUW: A Vision for Integrated Sensing and Prediction of Urban Water for Sustainable Cities.
Proceedings of the Dynamic Data-Driven Environmental Systems Science, 2014

Integration of DNA Methylation, Copy Number Variation, and Gene Expression for Gene Regulatory Network Inference and Application to Psychiatric Disorders.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Bioengineering, 2014

Multi-block and Multi-task Learning for Integrative Genomic Study.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Bioengineering, 2014

NMF-Based LncRNA-Disease Association Inference and Bi-Clustering.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Bioengineering, 2014

2013
Cnctdiscriminator: Coding and noncoding transcript Discriminator - an Excursion through Hypothesis Learning and Ensemble Learning Approaches.
J. Bioinform. Comput. Biol., 2013

Eigenspectra, a robust regression method for multiplexed Raman spectra analysis.
Int. J. Data Min. Bioinform., 2013

A Fast Multi-component Latent Variable Regression Framework for Quantitative Analysis of Surface-Enhanced Raman Spectra.
Proceedings of the 12th International Conference on Machine Learning and Applications, 2013

eQTL Mapping Study via Regularized Sparse Canonical Correlation Analysis.
Proceedings of the 12th International Conference on Machine Learning and Applications, 2013

Sparse generalized canonical correlation analysis for biological model integration: A genetic study of psychiatric disorders.
Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

Inference of gene regulatory networks by integrating gene expressions and genetic perturbations.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

eQTL epistasis: Detecting complex interaction effects between multiple loci from eQTL data.
Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

QLZCClust: Quaternary lempel-Ziv complexity based clustering of the RNA-seq read block segments.
Proceedings of the 13th IEEE International Conference on BioInformatics and BioEngineering, 2013

2012
A New Continuum Regression Method for Quantitative Analysis of Raman Spectrum.
Proceedings of the 11th International Conference on Machine Learning and Applications, 2012

CWT-PLSR for quantitative analysis of Raman spectrum.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

2011
Branch-and-Bound for Model Selection and Its Computational Complexity.
IEEE Trans. Knowl. Data Eng., 2011

Fast Kernel Discriminant Analysis for Classification of Liver Cancer Mass Spectra.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011

Nonlinear RANSAC Optimization for Parameter Estimation with Applications to Phagocyte Transmigration.
Proceedings of the 10th International Conference on Machine Learning and Applications and Workshops, 2011

Subcellular particles tracking in time-lapse confocal microscopy images.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

Discovery of lung cancer pathways using Reverse Phase Protein Microarray and prior-knowledge based Bayesian networks.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

Probabilistic Partial Least Square Regression: A Robust Model for Quantitative Analysis of Raman Spectroscopy Data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

A Framework for Personalized Medicine with Reverse Phase Protein Array and Drug Sensitivity.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010
Multibody Structure-and-Motion Segmentation by Branch-and-Bound Model Selection.
IEEE Trans. Image Process., 2010

Embedded planar surface segmentation system for stereo images.
Mach. Vis. Appl., 2010

Learning biological network using mutual information and conditional independence.
BMC Bioinform., 2010

Functional proteomic pattern identification under low dose ionizing radiation.
Artif. Intell. Medicine, 2010

Eigenspectra, a robust regression method for multiplexed Raman spectra analysis.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Computational modeling of phagocyte transmigration during biomaterial-mediated foreign body responses.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Learning Proteomic Network Structure by a New Hill Climbing Algorithm.
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010

2009
An Extended Markov Blanket Approach to Proteomic Biomarker Detection From High-Resolution Mass Spectrometry Data.
IEEE Trans. Inf. Technol. Biomed., 2009

Tracking multiple interacting subcellular structure by sequential Monte Carlo method.
Int. J. Data Min. Bioinform., 2009

Prostate cancer biomarker discovery using high performance mass spectral serum profiling.
Comput. Methods Programs Biomed., 2009

A kernel-based approach for detecting outliers of high-dimensional biological data.
BMC Bioinform., 2009

Computation complexity of branch-and-bound model selection.
Proceedings of the IEEE 12th International Conference on Computer Vision, ICCV 2009, Kyoto, Japan, September 27, 2009

2008
Multistage Branch-and-Bound Merging for Planar Surface Segmentation in Disparity Space.
IEEE Trans. Image Process., 2008

Wireless Sensor Network Lifetime Analysis Using Interval Type-2 Fuzzy Logic Systems.
IEEE Trans. Fuzzy Syst., 2008

Multihypothesis Prior for Segmentation of Stereo Disparity.
IEEE Signal Process. Lett., 2008

Automatic Video Object Extraction with Camera in Motion.
Int. J. Image Graph., 2008

Biomarker selection and sample prediction for multi-category disease on MALDI-TOF data.
Bioinform., 2008

Multi-stage branch-and-bound for maximum variance disparity clustering.
Proceedings of the 19th International Conference on Pattern Recognition (ICPR 2008), 2008

Branch-and-bound hypothesis selection for two-view multiple structure and motion segmentation.
Proceedings of the 2008 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2008), 2008

Biological Data Outlier Detection Based on Kullback-Leibler Divergence.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

Functional Proteomic Pattern Identification under Low Dose Ionizing Radiation.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

A hybrid computational model for phagocyte transmigration.
Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

Signaling biomarker pattern discovery using reverse phase protein microarray.
Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

2007
Hidden Markov Model-Based Weighted Likelihood Discriminant for 2-D Shape Classification.
IEEE Trans. Image Process., 2007

Three dimensional analysis of the vascular perfusion for anterolateral thigh perforator flaps.
Proceedings of the Medical Imaging 2007: Image Processing, 2007

A Statistical Approach for Intensity Loss Compensation of Confocal Microscopy Images.
Proceedings of the International Conference on Image Processing, 2007

Real-time Planar Surface Segmentation in Disparity Space.
Proceedings of the 2007 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2007), 2007

Mathematical Modeling of Phagocyte Chemotaxis toward and Adherence to Biomaterial Implants.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

Multiple Interacting Subcellular Structure Tracking by Sequential Monte Carlo Method.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

A Novel Classification Method for Analysis of Multi-stage Diseases via Mass Spectrometric Data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

Phagocyte Transmigration Modeling Using System Dynamic Controls.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

Biomarker Selection for Predicting Alzheimer Disease Using High-Resolution MALDI-TOF Data.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
Proteomic Biomarker Identification for Diagnosis of Early Relapse in Ovarian Cancer.
J. Bioinform. Comput. Biol., 2006

A New Maximum-Relevance Criterion for Significant Gene Selection.
Proceedings of the Pattern Recognition in Bioinformatics, International Workshop, 2006

Region-based tracking of protein compounds.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006

Markov Chain Monte Carlo Data Association for Merge and Split Detection in Tracking Protein Clusters.
Proceedings of the 18th International Conference on Pattern Recognition (ICPR 2006), 2006

Occlusion Resistant Shape Classifier based onWarped Optimal Path Matching.
Proceedings of the 18th International Conference on Pattern Recognition (ICPR 2006), 2006

Detecting Occlusion for Hidden Markov Modeled Shapes.
Proceedings of the International Conference on Image Processing, 2006

4D Vascular Tree Reconstruction using Moving Grid Deformation.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

Feature Selection, Matching, and Evaluation for Subcellular Structure Tracking.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

Classification of Relapse Ovarian Cancer on MALDI-TOF Mass Spectrometry Data.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

A New Hybrid Approach for Unsupervised Gene Selection.
Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2006

Prediction of labor for pregnant women using high-resolution mass spectrometry data.
Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

Unsupervised Gene Selection For High Dimensional Data.
Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

2005
A multi-Kalman filtering approach for video tracking of human-delineated objects in cluttered environments.
Comput. Vis. Image Underst., 2005

Automatic Extraction and Localization of Multiple Moving Objects with Stereo Camera in Motion.
Proceedings of the IEEE International Conference on Systems, 2005

Shape-based 3D vascular tree extraction for perforator flaps.
Proceedings of the Medical Imaging 2005: Image Processing, 2005

Hidden Markov Model Based Weighted Likelihood Discriminant for Minimum Error Shape Classification.
Proceedings of the 2005 IEEE International Conference on Multimedia and Expo, 2005

A particle filter framework using optimal importance function for protein molecules tracking.
Proceedings of the 2005 International Conference on Image Processing, 2005

Automatic video object shape extraction and its classification with camera in motion.
Proceedings of the 2005 International Conference on Image Processing, 2005

Shape Classifer Based on Generalized Probabilistic Descent Method with Hidden Markov Descriptor.
Proceedings of the 10th IEEE International Conference on Computer Vision (ICCV 2005), 2005

Multicategory Classification using Extended SVM-RFE and Markov Blanket on SELDITOF Mass Spectrometry Data.
Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

A New Semi-Supervised Subspace Clustering Algorithm on Fitting Mixture Models.
Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2005

Peptide Identification by Tandem Mass Spectra: An Efficient Parallel Searching.
Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005

Hidden Markov Model Based 2D Shape Classification.
Proceedings of the Advanced Concepts for Intelligent Vision Systems, 2005

A two-Way Searching Algorithm for de novo peptide sequencing via tandem mass spectrometry.
Proceedings of the Advances in Bioinformatics and Its Applications, 2005

Emerging Pattern based subspace Clustering of microarray gene expression Data using Mixture Models.
Proceedings of the Advances in Bioinformatics and Its Applications, 2005

2004
On the development of a fully automated cryosection image registration system.
Proceedings of the IEEE International Conference on Systems, 2004

A motion field reconstruction scheme for smooth boundary video object segmentation.
Proceedings of the 2004 International Conference on Image Processing, 2004

2003
Object shape delineation during tracking process.
Proceedings of the 2003 International Conference on Image Processing, 2003

Self-Occlusion Immune Video Tracking of Objects in Cluttered Environments.
Proceedings of the 2003 IEEE Conference on Advanced Video and Signal Based Surveillance (AVSS 2003), 2003

2002
Circularly establishing feature correspondences and motion estimation for object tracking via multivisit of Kalman filtering.
Proceedings of the Image Processing: Algorithms and Systems, 2002

A multi-frame based motion estimation for semantic object tracking in the presence of occlusion.
Proceedings of the 2002 International Conference on Image Processing, 2002

2001
Multi-Visit of Kalman Filtering for Semantic Object Tracking.
Proceedings of the 2001 IEEE International Conference on Multimedia and Expo, 2001

1999
Interactive Color Image Segmentation Editor Driven by Active Contour Model.
Proceedings of the 1999 International Conference on Image Processing, 1999

1998
A Deformable Model for Human Organ Extraction.
Proceedings of the 1998 IEEE International Conference on Image Processing, 1998


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