Jean-Fred Fontaine

Orcid: 0000-0002-1101-4091

According to our database1, Jean-Fred Fontaine authored at least 17 papers between 2004 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Bibliography

2022
Batch effect detection and correction in RNA-seq data using machine-learning-based automated assessment of quality.
BMC Bioinform., 2022

2021
LipiDisease: associate lipids to diseases using literature mining.
Bioinform., 2021

2017
Lost Strings in Genomes: What Sense Do They Make?
Proceedings of the Bioinformatics and Biomedical Engineering, 2017

Disease-Genes Must Guide Data Source Integration in the Gene Prioritization Process.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2017

2014
CellFinder: a cell data repository.
Nucleic Acids Res., 2014

Alkemio: association of chemicals with biomedical topics by text and data mining.
Nucleic Acids Res., 2014

2013
Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions.
PLoS Comput. Biol., 2013

CELDA - an ontology for the comprehensive representation of cells in complex systems.
BMC Bioinform., 2013

Using cited references to improve the retrieval of related biomedical documents.
BMC Bioinform., 2013

Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts.
Database J. Biol. Databases Curation, 2013

2011
Génie: literature-based gene prioritization at multi genomic scale.
Nucleic Acids Res., 2011

PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries.
BMC Bioinform., 2011

Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases.
Bioinform., 2011

2010
LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships.
BMC Bioinform., 2010

2009
MedlineRanker: flexible ranking of biomedical literature.
Nucleic Acids Res., 2009

2005
Computing expectation values for RNA motifs using discrete convolutions.
BMC Bioinform., 2005

2004
The ERPIN server: an interface to profile-based RNA motif identification.
Nucleic Acids Res., 2004


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