Jayashree Kalpathy-Cramer

Orcid: 0000-0001-8906-9618

According to our database1, Jayashree Kalpathy-Cramer authored at least 135 papers between 2006 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
Privacy preservation for federated learning in health care.
Patterns, 2024

Fair evaluation of federated learning algorithms for automated breast density classification: The results of the 2022 ACR-NCI-NVIDIA federated learning challenge.
Medical Image Anal., 2024

Environment Scan of Generative AI Infrastructure for Clinical and Translational Science.
CoRR, 2024

Fair Evaluation of Federated Learning Algorithms for Automated Breast Density Classification: The Results of the 2022 ACR-NCI-NVIDIA Federated Learning Challenge.
CoRR, 2024

Deep Learning-based Prediction of Breast Cancer Tumor and Immune Phenotypes from Histopathology.
CoRR, 2024

Cycle-GANs Generated Difference Maps to Interpret Race Prediction from Medical Images.
Proceedings of the Ethics and Fairness in Medical Imaging, 2024

Addressing Catastrophic Forgetting by Modulating Global Batch Normalization Statistics for Medical Domain Expansion.
Proceedings of the Artificial Intelligence in Pancreatic Disease Detection and Diagnosis, and Personalized Incremental Learning in Medicine, 2024

Conformal Prediction and Monte Carlo Inference for Addressing Uncertainty in Cervical Cancer Screening.
Proceedings of the Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, 2024

Multimodal Deep Learning-Based Prediction of Immune Checkpoint Inhibitor Efficacy in Brain Metastases.
Proceedings of the Cancer Prevention, Detection, and Intervention - Third MICCAI Workshop, 2024

2023
FDU-Net: Deep Learning-Based Three-Dimensional Diffuse Optical Image Reconstruction.
IEEE Trans. Medical Imaging, 2023

FUTURE-AI: International consensus guideline for trustworthy and deployable artificial intelligence in healthcare.
CoRR, 2023

Patient-specific, mechanistic models of tumor growth incorporating artificial intelligence and big data.
CoRR, 2023

A generalized framework to predict continuous scores from medical ordinal labels.
CoRR, 2023

A Deep Learning Based Framework for Joint Image Registration and Segmentation of Brain Metastases on Magnetic Resonance Imaging.
Proceedings of the Machine Learning for Healthcare Conference, 2023

Assessing robustness of a deep-learning model for COVID-19 classification on chest radiographs.
Proceedings of the Medical Imaging 2023: Computer-Aided Diagnosis, San Diego, 2023

2022
SplitAVG: A Heterogeneity-Aware Federated Deep Learning Method for Medical Imaging.
IEEE J. Biomed. Health Informatics, 2022

Improving the repeatability of deep learning models with Monte Carlo dropout.
npj Digit. Medicine, 2022

Highdicom: a Python Library for Standardized Encoding of Image Annotations and Machine Learning Model Outputs in Pathology and Radiology.
J. Digit. Imaging, 2022

MONAI: An open-source framework for deep learning in healthcare.
CoRR, 2022

Estimating Test Performance for AI Medical Devices under Distribution Shift with Conformal Prediction.
CoRR, 2022

Three Applications of Conformal Prediction for Rating Breast Density in Mammography.
CoRR, 2022

Decreasing Annotation Burden of Pairwise Comparisons with Human-in-the-Loop Sorting: Application in Medical Image Artifact Rating.
CoRR, 2022

Is this good enough? On expert perception of brain tumor segmentation quality.
Proceedings of the Medical Imaging 2022: Image Perception, 2022

Do I know this? segmentation uncertainty under domain shift.
Proceedings of the Medical Imaging 2022: Image Processing, 2022

Towards More Efficient Data Valuation in Healthcare Federated Learning Using Ensembling.
Proceedings of the Distributed, Collaborative, and Federated Learning, and Affordable AI and Healthcare for Resource Diverse Global Health, 2022

Fair Conformal Predictors for Applications in Medical Imaging.
Proceedings of the Thirty-Sixth AAAI Conference on Artificial Intelligence, 2022

2021
Lung Nodule Malignancy Prediction in Sequential CT Scans: Summary of ISBI 2018 Challenge.
IEEE Trans. Medical Imaging, 2021

DeepNeuro: an open-source deep learning toolbox for neuroimaging.
Neuroinformatics, 2021

QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation - Analysis of Ranking Metrics and Benchmarking Results.
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CoRR, 2021

Monte Carlo dropout increases model repeatability.
CoRR, 2021

Distribution-Free Federated Learning with Conformal Predictions.
CoRR, 2021

Not Color Blind: AI Predicts Racial Identity from Black and White Retinal Vessel Segmentations.
CoRR, 2021

Deploying clinical machine learning? Consider the following...
CoRR, 2021

Evaluating subgroup disparity using epistemic uncertainty in mammography.
CoRR, 2021

The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classification.
CoRR, 2021

Addressing catastrophic forgetting for medical domain expansion.
CoRR, 2021

Structural Visual Guidance Attention Networks In Retinopathy Of Prematurity.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Opportunities and Challenges for Deep Learning in Brain Lesions.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2021

2020
Siamese neural networks for continuous disease severity evaluation and change detection in medical imaging.
npj Digit. Medicine, 2020

Corrigendum to: Accounting for data variability in multi-institutional distributed deep learning for medical imaging.
J. Am. Medical Informatics Assoc., 2020

Accounting for data variability in multi-institutional distributed deep learning for medical imaging.
J. Am. Medical Informatics Assoc., 2020

The unreasonable effectiveness of Batch-Norm statistics in addressing catastrophic forgetting across medical institutions.
CoRR, 2020

Towards Trainable Saliency Maps in Medical Imaging.
CoRR, 2020

Assessing the (Un)Trustworthiness of Saliency Maps for Localizing Abnormalities in Medical Imaging.
CoRR, 2020

Assessing the validity of saliency maps for abnormality localization in medical imaging.
CoRR, 2020

An exploration of uncertainty information for segmentation quality assessment.
Proceedings of the Medical Imaging 2020: Image Processing, 2020


Radiomics and Radiogenomics with Deep Learning in Neuro-oncology.
Proceedings of the Machine Learning in Clinical Neuroimaging and Radiogenomics in Neuro-oncology, 2020

Segmentation, Survival Prediction, and Uncertainty Estimation of Gliomas from Multimodal 3D MRI Using Selective Kernel Networks.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2020

Diagnosability of Synthetic Retinal Fundus Images for Plus Disease Detection in Retinopathy of Prematurity.
Proceedings of the AMIA 2020, 2020

Fast and Accurate Ranking Regression.
Proceedings of the 23rd International Conference on Artificial Intelligence and Statistics, 2020

2019
Classification and comparison via neural networks.
Neural Networks, 2019

Split Learning for collaborative deep learning in healthcare.
CoRR, 2019

Give me (un)certainty - An exploration of parameters that affect segmentation uncertainty.
CoRR, 2019

ExpertMatcher: Automating ML Model Selection for Clients using Hidden Representations.
CoRR, 2019

ExpertMatcher: Automating ML Model Selection for Users in Resource Constrained Countries.
CoRR, 2019

CaRENets: Compact and Resource-Efficient CNN for Homomorphic Inference on Encrypted Medical Images.
CoRR, 2019

Accelerated Experimental Design for Pairwise Comparisons.
Proceedings of the 2019 SIAM International Conference on Data Mining, 2019

Towards Practical Unsupervised Anomaly Detection on Retinal Images.
Proceedings of the Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data, 2019

Improved interpretability for computer-aided severity assessment of retinopathy of prematurity.
Proceedings of the Medical Imaging 2019: Computer-Aided Diagnosis, San Diego, 2019

A Severity Score for Retinopathy of Prematurity.
Proceedings of the 25th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining, 2019

Variational Inference from Ranked Samples with Features.
Proceedings of The 11th Asian Conference on Machine Learning, 2019

Experiences from the ImageCLEF Medical Retrieval and Annotation Tasks.
Proceedings of the Information Retrieval Evaluation in a Changing World, 2019

2018
Field of View Normalization in Multi-Site Brain MRI.
Neuroinformatics, 2018

Evaluation-as-a-Service for the Computational Sciences: Overview and Outlook.
ACM J. Data Inf. Qual., 2018

Distributed deep learning networks among institutions for medical imaging.
J. Am. Medical Informatics Assoc., 2018

Semi-Supervised Deep Learning for Abnormality Classification in Retinal Images.
CoRR, 2018

Deep feature transfer between localization and segmentation tasks.
CoRR, 2018

DeepNeuro: an open-source deep learning toolbox for neuroimaging.
CoRR, 2018

High-resolution medical image synthesis using progressively grown generative adversarial networks.
CoRR, 2018

Sequential neural networks for biologically-informed glioma segmentation.
Proceedings of the Medical Imaging 2018: Image Processing, 2018

Experimental Design under the Bradley-Terry Model.
Proceedings of the Twenty-Seventh International Joint Conference on Artificial Intelligence, 2018

Deep Learning for Image Quality Assessment of Fundus Images in Retinopathy of Prematurity.
Proceedings of the AMIA 2018, 2018

2017
Personalized Radiotherapy Planning Based on a Computational Tumor Growth Model.
IEEE Trans. Medical Imaging, 2017

Institutionally Distributed Deep Learning Networks.
CoRR, 2017

Sequential 3D U-Nets for Biologically-Informed Brain Tumor Segmentation.
CoRR, 2017

Accelerated Reconstruction of Perfusion-Weighted MRI Enforcing Jointly Local and Nonlocal Spatio-temporal Constraints.
CoRR, 2017

Automated Image Quality Assessment for Fundus Images in Retinopathy of Prematurity.
Proceedings of the AMIA 2017, 2017

2016
MRI Based Bayesian Personalization of a Tumor Growth Model.
IEEE Trans. Medical Imaging, 2016

Report on the Cloud-Based Evaluation Approaches Workshop 2015.
SIGIR Forum, 2016

A Comparison of Lung Nodule Segmentation Algorithms: Methods and Results from a Multi-institutional Study.
J. Digit. Imaging, 2016

Toward a severity index for ROP: An unsupervised approach.
Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016

Quantitative Imaging and Imaging Informatics in the Era of Precision Medicine.
Proceedings of the AMIA 2016, 2016

2015
The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS).
IEEE Trans. Medical Imaging, 2015

Report on the Evaluation-as-a-Service (EaaS) Expert Workshop.
SIGIR Forum, 2015

Evaluation-as-a-Service: Overview and Outlook.
CoRR, 2015

Dealing with inter-expert variability in retinopathy of prematurity: A machine learning approach.
Comput. Methods Programs Biomed., 2015

Evaluating performance of biomedical image retrieval systems - An overview of the medical image retrieval task at ImageCLEF 2004-2013.
Comput. Medical Imaging Graph., 2015

A decade of community-wide efforts in advancing medical image understanding and retrieval.
Comput. Medical Imaging Graph., 2015

Bayesian Personalization of Brain Tumor Growth Model.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Upsampling dynamic contrast enhanced MRI.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Analysis of shape assumptions in 3D reconstruction of retina from multiple fundus images.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

A GMM-based feature extraction technique for the automated diagnosis of Retinopathy of Prematurity.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

2014
Development of a Software for Quantitative Evaluation Radiotherapy Target and Organ-at-Risk Segmentation Comparison.
J. Digit. Imaging, 2014

Web based tools for visualizing imaging data and development of XNATView, a zero footprint image viewer.
Frontiers Neuroinformatics, 2014

Structure-based level set method for automatic retinal vasculature segmentation.
EURASIP J. Image Video Process., 2014

2013
Contour-based shape representation using principal curves.
Pattern Recognit., 2013

Developing a Survey to Assess Factors that Contribute to Physician Involvement in Clinical Research.
Proceedings of the MEDINFO 2013, 2013

Overview of the ImageCLEF 2013 Medical Tasks.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013

2012
Accurate Determination of Imaging Modality using an Ensemble of Text- and Image-Based Classifiers.
J. Digit. Imaging, 2012

Level sets for retinal vasculature segmentation using seeds from ridges and edges from phase maps.
Proceedings of the IEEE International Workshop on Machine Learning for Signal Processing, 2012

Observer and feature analysis on diagnosis of retinopathy of prematurity.
Proceedings of the IEEE International Workshop on Machine Learning for Signal Processing, 2012

Retinal vasculature segmentation using principal spanning forests.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

Overview of the ImageCLEF 2012 Medical Image Retrieval and Classification Tasks.
Proceedings of the CLEF 2012 Evaluation Labs and Workshop, 2012

2011
Medical multimedia analysis and retrieval.
Proceedings of the 19th International Conference on Multimedia 2011, Scottsdale, AZ, USA, November 28, 2011

Principal Curved Based Retinal Vessel Segmentation towards Diagnosis of Retinal Diseases.
Proceedings of the 2011 IEEE International Conference on Healthcare Informatics, 2011

Principal curve based semi-automatic segmentation of organs in 3D-CT.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011

Overview of the CLEF 2011 Medical Image Classification and Retrieval Tasks.
Proceedings of the CLEF 2011 Labs and Workshop, 2011

2010
Multimodal medical image retrieval: image categorization to improve search precision.
Proceedings of the 11th ACM SIGMM International Conference on Multimedia Information Retrieval, 2010

Retrieving Similar Cases from the Medical Literature - The ImageCLEF experience.
Proceedings of the MEDINFO 2010, 2010

The ImageCLEF Medical Retrieval Task at ICPR 2010 - Information Fusion to Combine Visual and Textual Information.
Proceedings of the Recognizing Patterns in Signals, Speech, Images and Videos, 2010

The ImageCLEF Medical Retrieval Task at ICPR 2010 - Information Fusion.
Proceedings of the 20th International Conference on Pattern Recognition, 2010

A Novel Application of Principal Surfaces to Segmentation in 4D-CT for Radiation Treatment Planning.
Proceedings of the Ninth International Conference on Machine Learning and Applications, 2010

Overview of the CLEF 2010 Medical Image Retrieval Track.
Proceedings of the CLEF 2010 LABs and Workshops, 2010

Improving Retrieval Using External Annotations: OHSU at ImageCLEF 2010.
Proceedings of the CLEF 2010 LABs and Workshops, 2010

The Medical Image Retrieval Task.
Proceedings of the ImageCLEF, Experimental Evaluation in Visual Information Retrieval, 2010

Relevance Judgments for Image Retrieval Evaluation.
Proceedings of the ImageCLEF, Experimental Evaluation in Visual Information Retrieval, 2010

Improving Early Precision in the ImageCLEF Medical Retrieval Task.
Proceedings of the ImageCLEF, Experimental Evaluation in Visual Information Retrieval, 2010

2009
The ImageCLEFmed Medical Image Retrieval Task Test Collection.
J. Digit. Imaging, 2009

Putting the Content Into Context: Features and Gaps in Image Retrieval.
Int. J. Heal. Inf. Syst. Informatics, 2009

Robust segmentation using non-parametric snakes with multiple cues for applications in radiation oncology.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

Overview of the First Workshop on Medical Content-Based Retrieval for Clinical Decision Support at MICCAI 2009.
Proceedings of the Medical Content-Based Retrieval for Clinical Decision Support, 2009

Multimodal Medical Image Retrieval: Improving Precision at ImageCLEF 2009.
Proceedings of the Working Notes for CLEF 2009 Workshop co-located with the 13th European Conference on Digital Libraries (ECDL 2009) , Corfù, Greece, September 30, 2009

Using Media Fusion and Domain Dimensions to Improve Precision in Medical Image Retrieval.
Proceedings of the Multilingual Information Access Evaluation II. Multimedia Experiments, 2009

Overview of the CLEF 2009 Medical Image Retrieval Track.
Proceedings of the Working Notes for CLEF 2009 Workshop co-located with the 13th European Conference on Digital Libraries (ECDL 2009) , Corfù, Greece, September 30, 2009

2008
Effectiveness of global features for automatic medical image classification and retrieval - The experiences of OHSU at ImageCLEFmed.
Pattern Recognit. Lett., 2008

Using Medline Queries to Generate Image Retrieval Tasks for Benchmarking.
Proceedings of the eHealth Beyond the Horizon, 2008

Overview of the ImageCLEFmed 2008 Medical Image Retrieval Task.
Proceedings of the Working Notes for CLEF 2008 Workshop co-located with the 12th European Conference on Digital Libraries (ECDL 2008) , 2008

Multimodal Medical Image Retrieval: OHSU at ImageCLEF 2008.
Proceedings of the Working Notes for CLEF 2008 Workshop co-located with the 12th European Conference on Digital Libraries (ECDL 2008) , 2008

Survival Prediction Models for Estimating the Benefit of Post-Operative Radiation Therapy for Gallbladder Cancer and Lung Cancer.
Proceedings of the AMIA 2008, 2008

2007
Automatic Image Modality Based Classification and Annotation to Improve Medical Image Retrieval.
Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007

Overview of the ImageCLEF 2007 Medical Retrieval and Annotation Tasks.
Proceedings of the Working Notes for CLEF 2007 Workshop co-located with the 11th European Conference on Digital Libraries (ECDL 2007), 2007

Overview of the ImageCLEFmed 2007 Medical Retrieval and Medical Annotation Tasks.
Proceedings of the Advances in Multilingual and Multimodal Information Retrieval, 2007

Medical Image Retrieval and Automatic Annotation: OHSU at ImageCLEF 2007.
Proceedings of the Advances in Multilingual and Multimodal Information Retrieval, 2007

2006
Medical Image Retrieval and Automated Annotation: OHSU at ImageCLEF 2006.
Proceedings of the Working Notes for CLEF 2006 Workshop co-located with the 10th European Conference on Digital Libraries (ECDL 2006), 2006


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