Jay D. Keasling

According to our database, Jay D. Keasling authored at least 10 papers between 2014 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Foldy: An open-source web application for interactive protein structure analysis.

Jacob B. Roberts, Alberto A Nava, Allison N. Pearson, Matthew R. Incha, Luis E. Valencia, Melody Ma, Abhay Rao, Jay D. Keasling

PLoS Comput. Biol., February, 2024

teemi: An open-source literate programming approach for iterative design-build-test-learn cycles in bioengineering.

Søren D. Petersen, Lucas Levassor, Christine M. Pedersen, Jan Madsen, Lea G. Hansen, Jie Zhang, Ahmad K. Haidar, Rasmus J. N. Frandsen, Jay D. Keasling, Tilmann Weber, Nikolaus Sonnenschein, Michael K. Jensen

PLoS Comput. Biol., 2024

2023

BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale.

Tyler W. H. Backman, Christina Schenk, Tijana Radivojevic, David Ando, Jahnavi Singh, Jeffrey J. Czajka, Zak Costello, Jay D. Keasling, Yinjie Tang, Elena V. Akhmatskaya, Héctor García Martín

PLoS Comput. Biol., November, 2023

ClusterCAD 2.0: an updated computational platform for chimeric type I polyketide synthase and nonribosomal peptide synthetase design.

Xavier B. Tao, Sarah Lafrance, Yifei Xing, Alberto A Nava, Héctor García Martín, Jay D. Keasling, Tyler W. H. Backman

Nucleic Acids Res., January, 2023

2018

ClusterCAD: a computational platform for type I modular polyketide synthase design.

Clara H. Eng, Tyler W. H. Backman, Constance B. Bailey, Christophe N. Magnan, Héctor García Martín, Leonard Katz, Pierre Baldi, Jay D. Keasling

Nucleic Acids Res., 2018

2017

Erratum to: The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism.

Garrett W. Birkel, Amit Ghosh, Vinay Satish Kumar, Daniel Weaver, David Ando, Tyler W. H. Backman, Adam P. Arkin, Jay D. Keasling, Héctor García Martín

BMC Bioinform., 2017

The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism.

Garrett W. Birkel, Amit Ghosh, Vinay Satish Kumar, Daniel Weaver, David Ando, Tyler W. H. Backman, Adam P. Arkin, Jay D. Keasling, Héctor García Martín

BMC Bioinform., 2017

2015

A Method to Constrain Genome-Scale Models with ¹³C Labeling Data.

Héctor García Martín, Vinay Satish Kumar, Daniel Weaver, Amit Ghosh, Victor Chubukov, Aindrila Mukhopadhyay, Adam P. Arkin, Jay D. Keasling

PLoS Comput. Biol., 2015

2014

A Peptide-Based Method for ¹³C Metabolic Flux Analysis in Microbial Communities.

Amit Ghosh, Jerome P. Nilmeier, Daniel Weaver, Paul D. Adams, Jay D. Keasling, Aindrila Mukhopadhyay, Christopher J. Petzold, Héctor García Martín

PLoS Comput. Biol., 2014

Independence among synthetic genetic devices in the bacterium Escherichia coli extends to the time-domain.

Meghdad Hajimorad, Jay D. Keasling

Proceedings of the IEEE Biomedical Circuits and Systems Conference, 2014