Jason Greenbaum

According to our database, Jason Greenbaum authored at least 16 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

The receiver operating characteristic curve accurately assesses imbalanced datasets.

Eve Richardson, Raphael Trevizani, Jason A. Greenbaum, Hannah Carter, Morten Nielsen, Bjoern Peters

Patterns, 2024

2023

PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins.

Daniel Marrama, William D. Chronister, Luise Westernberg, Randi Vita, Zeynep Kosaloglu-Yalçin, Alessandro Sette, Morten Nielsen, Jason A. Greenbaum, Bjoern Peters

BMC Bioinform., December, 2023

Coronavirus Immunotherapeutic Consortium Database.

Jarjapu Mahita, Brendan Ha, Anais Gambiez, Sharon L. Schendel, Haoyang Li, Kathryn M. Hastie, S. Moses Dennison, Kan Li, Natalia Kuzmina, Sivakumar Periasamy, Alexander Bukreyev, Jennifer E. Munt, Mary Osei-Twum, Caroline Atyeo, James A. Overton, Randi Vita, Hector Guzman-Orozco, Marcus Mendes, Mari Kojima, Peter J. Halfmann, Yoshihiro Kawaoka, Galit Alter, Luc Gagnon, Ralph S. Baric, Georgia D. Tomaras, Tim Germann, Daniel Bedinger, Jason A. Greenbaum, Erica Ollmann Saphire, Bjoern Peters

Database J. Biol. Databases Curation, February, 2023

2022

Towards the prediction of non-peptidic epitopes.

Paul F. Zierep, Randi Vita, Nina Blazeska, Aurélien F. A. Moumbock, Jason A. Greenbaum, Bjoern Peters, Stefan Günther

PLoS Comput. Biol., 2022

A comprehensive analysis of the IEDB MHC class-I automated benchmark.

Raphael Trevizani, Zhen Yan, Jason A. Greenbaum, Alessandro Sette, Morten Nielsen, Bjoern Peters

Briefings Bioinform., 2022

2019

IEDB-AR: immune epitope database - analysis resource in 2019.

Sandeep Kumar Dhanda, Swapnil Mahajan, Sinu Paul, Zhen Yan, Haeuk Kim, Martin Closter Jespersen, Vanessa Isabell Jurtz, Massimo Andreatta, Jason A. Greenbaum, Paolo Marcatili, Alessandro Sette, Morten Nielsen, Bjoern Peters

Nucleic Acids Res., 2019

2018

An automated benchmarking platform for MHC class II binding prediction methods.

Massimo Andreatta, Thomas Trolle, Zhen Yan, Jason A. Greenbaum, Bjoern Peters, Morten Nielsen

Bioinform., 2018

2015

The immune epitope database (IEDB) 3.0.

Randi Vita, James A. Overton, Jason A. Greenbaum, Julia V. Ponomarenko, Jason D. Clark, Jason R. Cantrell, Daniel K. Wheeler, Joseph L. Gabbard, Deborah Hix, Alessandro Sette, Bjoern Peters

Nucleic Acids Res., 2015

Automated benchmarking of peptide-MHC class I binding predictions.

Thomas Trolle, Imir G. Metushi, Jason A. Greenbaum, Yohan Kim, John Sidney, Ole Lund, Alessandro Sette, Bjoern Peters, Morten Nielsen

Bioinform., 2015

2014

The interplay of sequence conservation and T cell immune recognition.

Anne Bresciani, Jason Greenbaum, Cecilia S. Lindestam Arlehamn, Alessandro Sette, Morten Nielsen, Bjoern Peters

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

Properties of MHC Class I Presented Peptides That Enhance Immunogenicity.

Jorg J. A. Calis, Matt Maybeno, Jason A. Greenbaum, Daniela Weiskopf, Aruna D. De Silva, Alessandro Sette, Can Kesmir, Björn Peters

PLoS Comput. Biol., 2013

Query enhancement through the practical application of ontology: the IEDB and OBI.

Randi Vita, James A. Overton, Jason Greenbaum, Alessandro Sette, Björn Peters

J. Biomed. Semant., 2013

A Taxonomy for Immunologists.

James A. Overton, Randi Vita, Jason Greenbaum, Heiko Dietze, Alessandro Sette, Bjoern Peters

Proceedings of the 4th International Conference on Biomedical Ontology, 2013

2012

Immune epitope database analysis resource.

Yohan Kim, Julia V. Ponomarenko, Zhanyang Zhu, Dorjee Tamang, Peng Wang, Jason Greenbaum, Claus Lundegaard, Alessandro Sette, Ole Lund, Philip E. Bourne, Morten Nielsen, Bjoern Peters

Nucleic Acids Res., 2012

2010

The Immune Epitope Database 2.0.

Randi Vita, Laura Zarebski, Jason Greenbaum, Hussein Emami, Ilka Hoof, Nima Salimi, Rohini Damle, Alessandro Sette, Björn Peters

Nucleic Acids Res., 2010

2008

Immune epitope database analysis resource (IEDB-AR).

Qing Zhang, Peng Wang, Yohan Kim, Pernille Haste-Andersen, John E. Beaver, Philip E. Bourne, Huynh-Hoa Bui, Søren Buus, Sune Frankild, Jason Greenbaum, Ole Lund, Claus Lundegaard, Morten Nielsen, Julia V. Ponomarenko, Alessandro Sette, Zhanyang Zhu, Björn Peters

Nucleic Acids Res., 2008