Jason Fan

According to our database, Jason Fan authored at least 8 papers between 2018 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Fulgor: a fast and compact k-mer index for large-scale matching and color queries.

Jason Fan, Jamshed Khan, Noor Pratap Singh, Giulio Ermanno Pibiri, Rob Patro

Algorithms Mol. Biol., December, 2024

Where the Patterns Are: Repetition-Aware Compression for Colored de Bruijn Graphs^*.

Alessio Campanelli, Giulio Ermanno Pibiri, Jason Fan, Rob Patro

J. Comput. Biol., 2024

Meta-colored Compacted de Bruijn Graphs.

Giulio Ermanno Pibiri, Jason Fan, Rob Patro

Proceedings of the Research in Computational Molecular Biology, 2024

2023

Analyzing and indexing huge reference sequence collections.

Jason Fan

PhD thesis, 2023

Spectrum Preserving Tilings Enable Sparse and Modular Reference Indexing.

Jason Fan, Jamshed Khan, Giulio Ermanno Pibiri, Rob Patro

Proceedings of the Research in Computational Molecular Biology, 2023

2022

ScalpelSig Designs Targeted Genomic Panels from Data to Detect Activity of Mutational Signatures.

Nicholas Franzese, Jason Fan, Roded Sharan, Mark D. M. Leiserson

J. Comput. Biol., 2022

Perplexity: evaluating transcript abundance estimation in the absence of ground truth.

Jason Fan, Skylar Chan, Rob Patro

Algorithms Mol. Biol., 2022

2018

A Multi-species Functional Embedding Integrating Sequence and Network Structure.

Mark D. M. Leiserson, Jason Fan, Anthony Cannistra, Inbar Fried, Tim Lim, Thomas Schaffner, Mark Crovella, Benjamin J. Hescott

Proceedings of the Research in Computational Molecular Biology, 2018