Jared Adolf-Bryfogle

According to our database, Jared Adolf-Bryfogle authored at least 6 papers between 2015 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Growing Glycans in Rosetta: Accurate de novo glycan modeling, density fitting, and rational sequon design.

Jared Adolf-Bryfogle, Jason W. Labonte, John C. Kraft, Maxim Shapovalov, Sebastian Raemisch, Thomas Lütteke, Frank Dimaio, Christopher D. Bahl, Jesper Pallesen, Neil P. King, Jeffrey J. Gray, Daniel W. Kulp, William R. Schief

PLoS Comput. Biol., 2024

2021

CoV3D: a database of high resolution coronavirus protein structures.

Ragul Gowthaman, Johnathan D. Guest, Rui Yin, Jared Adolf-Bryfogle, William R. Schief, Brian G. Pierce

Nucleic Acids Res., 2021

2020

Better together: Elements of successful scientific software development in a distributed collaborative community.

Julia Koehler Leman, Brian D. Weitzner, P. Douglas Renfrew, Steven M. Lewis, Rocco Moretti, Andrew M. Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W. Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William R. Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland L. Dunbrack Jr., Tanja Kortemme, Andrew Leaver-Fay, Charlie E. M. Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J. Gray, Richard Bonneau

PLoS Comput. Biol., 2020

2018

RosettaAntibodyDesign (RAbD): A general framework for computational antibody design.

Jared Adolf-Bryfogle, Oleksandr Kalyuzhniy, Michael Kubitz, Brian D. Weitzner, Xiaozhen Hu, Yumiko Adachi, William R. Schief, Roland L. Dunbrack Jr.

PLoS Comput. Biol., 2018

2017

Residue-centric modeling and design of saccharide and glycoconjugate structures.

Jason W. Labonte, Jared Adolf-Bryfogle, William R. Schief, Jeffrey J. Gray

J. Comput. Chem., 2017

2015

PyIgClassify: a database of antibody CDR structural classifications.

Jared Adolf-Bryfogle, Qifang Xu, Benjamin North, Andreas Lehmann, Roland L. Dunbrack Jr.

Nucleic Acids Res., 2015