Janna Hastings

According to our database, Janna Hastings authored at least 73 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Interpretable ontology extension in chemistry.

Martin Glauer, Adel Memariani, Fabian Neuhaus, Till Mossakowski, Janna Hastings

Semantic Web, 2024

Cross-Care: Assessing the Healthcare Implications of Pre-training Data on Language Model Bias.

Shan Chen, Jack Gallifant, Mingye Gao, Pedro Moreira, Nikolaj Munch, Ajay Muthukkumar, Arvind Rajan, Jaya Kolluri, Amelia Fiske, Janna Hastings, Hugo J. W. L. Aerts, Brian Anthony, Leo Anthony Celi, William G. La Cava, Danielle S. Bitterman

CoRR, 2024

Applying Large Language Models to Interpret Qualitative Interviews in Healthcare.

Marie Wosny, Janna Hastings

Proceedings of the Digital Health and Informatics Innovations for Sustainable Health Care Systems, 2024

2023

Neuro-Symbolic Semantic Learning for Chemistry.

Martin Glauer, Till Mossakowski, Fabian Neuhaus, Adel Memariani, Janna Hastings

Proceedings of the Compendium of Neurosymbolic Artificial Intelligence, 2023

Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities.

Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Skoda, Valentina A. M. Tamma

TGDK, 2023

Applied ontology: Where are we now and where are we going?

Janna Hastings, John A. Bateman

Appl. Ontology, 2023

Ontology Pre-training for Poison Prediction.

Martin Glauer, Fabian Neuhaus, Till Mossakowski, Janna Hastings

Proceedings of the KI 2023: Advances in Artificial Intelligence, 2023

Human Factors Influencing the Experience of Healthcare Professionals Using Digital Tools.

Marie Wosny, Livia Strasser, Janna Hastings

Proceedings of the Healthcare Transformation with Informatics and Artificial Intelligence, 2023

2022

When one Logic is Not Enough: Integrating First-order Annotations in OWL Ontologies.

Simon Flügel, Martin Glauer, Fabian Neuhaus, Janna Hastings

CoRR, 2022

Ontology development is consensus creation, not (merely) representation.

Fabian Neuhaus, Janna Hastings

Appl. Ontology, 2022

ESC-Rules: Explainable, Semantically Constrained Rule Sets.

Martin Glauer, Robert West, Susan Michie, Janna Hastings

Proceedings of the 16th International Workshop on Neural-Symbolic Learning and Reasoning as part of the 2nd International Joint Conference on Learning & Reasoning (IJCLR 2022), 2022

2021

Learning chemistry: exploring the suitability of machine learning for the task of structure-based chemical ontology classification.

Janna Hastings, Martin Glauer, Adel Memariani, Fabian Neuhaus, Till Mossakowski

J. Cheminformatics, 2021

Why and how to engage expert stakeholders in ontology development: insights from social and behavioural sciences.

Emma Norris, Janna Hastings, Marta M. Marques, Ailbhe N. Finnerty, Silje Zink, Susan Michie

J. Biomed. Semant., 2021

Scientific Ontologies, Digital Curation and the Learning Knowledge Ecosystem.

Janna Hastings

Proceedings of the Conference on Digital Curation Technologies (Qurator 2021), Berlin, Germany, February 8th - to, 2021

FOWL - An OWL to FOL Translator.

Simon Flügel, Anna Kleinau, Fabian Neuhaus, Martin Glauer, Janna Hastings

Proceedings of the Joint Ontology Workshops 2021 Episode VII: The Bolzano Summer of Knowledge co-located with the 12th International Conference on Formal Ontology in Information Systems (FOIS 2021), 2021

Ontologies for the Behavioural and Social Sciences: Opportunities and Challenges.

Janna Hastings, Robert West, Susan Michie, Caitlin Notley, Sharon Cox

Proceedings of the International Conference on Biomedical Ontologies 2021 co-located with the Workshop on Ontologies for the Behavioural and Social Sciences (OntoBess 2021) as part of the Bolzano Summer of Knowledge (BOSK 2021), 2021

Automated and Explainable Ontology Extension based on Deep Learning: A Case Study in the Chemical Domain.

Adel Memariani, Martin Glauer, Fabian Neuhaus, Till Mossakowski, Janna Hastings

Proceedings of the Workshop on Data meets Applied Ontologies in Explainable AI (DAO-XAI 2021) part of Bratislava Knowledge September (BAKS 2021), 2021

Mental Functioning Ontologies.

Guy Divita, Maryanne Sacco, Janna Hastings, Piper Ranallo

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2019

The Literary Theme Ontology for Media Annotation and Information Retrieval.

Paul Sheridan, Mikael Onsjö, Janna Hastings

Proceedings of the Joint Ontology Workshops 2019 Episode V: The Styrian Autumn of Ontology, 2019

Representing Literary Characters and their Attributes in an Ontology.

Janna Hastings, Stefan Schulz

Proceedings of the Joint Ontology Workshops 2019 Episode V: The Styrian Autumn of Ontology, 2019

2016

ChEBI in 2016: Improved services and an expanding collection of metabolites.

Janna Hastings, Gareth I. Owen, Adriano Dekker, Marcus Ennis, Namrata Kale, Venkatesh Muthukrishnan, Steve Turner, Neil Swainston, Pedro Mendes, Christoph Steinbeck

Nucleic Acids Res., 2016

libChEBI: an API for accessing the ChEBI database.

Neil Swainston, Janna Hastings, Adriano Dekker, Venkatesh Muthukrishnan, John W. May, Christoph Steinbeck, Pedro Mendes

J. Cheminformatics, 2016

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy.

Yannick Djoumbou, Roman Eisner, Craig Knox, Leonid L. Chepelev, Janna Hastings, Gareth I. Owen, Eoin Fahy, Christoph Steinbeck, Shankar Subramanian, Evan Bolton, Russell Greiner, David S. Wishart

J. Cheminformatics, 2016

2015

DINTO: Using OWL Ontologies and SWRL Rules to Infer Drug-Drug Interactions and Their Mechanisms.

María Herrero-Zazo, Isabel Segura-Bedmar, Janna Hastings, Paloma Martínez

J. Chem. Inf. Model., 2015

PubChemRDF: towards the semantic annotation of PubChem compound and substance databases.

Gang Fu, Colin R. Batchelor, Michel Dumontier, Janna Hastings, Egon L. Willighagen, Evan Bolton

J. Cheminformatics, 2015

Application of Domain Ontologies to Natural Language Processing: A Case Study for Drug-Drug Interactions.

María Herrero-Zazo, Isabel Segura-Bedmar, Janna Hastings, Paloma Martínez

Int. J. Inf. Retr. Res., 2015

Digital Scholarship and Open Science in Psychology and the Behavioral Sciences (Dagstuhl Perpectives Workshop 15302).

Alexander García Castro, Janna Hastings, Robert Stevens, Erich Weichselgartner

Dagstuhl Reports, 2015

BiNChE: A web tool and library for chemical enrichment analysis based on the ChEBI ontology.

Pablo A. Moreno, Stephan Beisken, Bhavana Harsha, Venkatesh Muthukrishnan, Ilinca Tudose, Adriano Dekker, Stefanie Dornfeldt, Franziska Taruttis, Ivo Grosse, Janna Hastings, Steffen Neumann, Christoph Steinbeck

BMC Bioinform., 2015

eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment.

Janna Hastings, Nina Jeliazkova, Gareth I. Owen, Georgia Tsiliki, Cristian R. Munteanu, Christoph Steinbeck, Egon L. Willighagen

J. Biomed. Semant., 2015

ChEBI for systems biology and metabolic modelling.

Janna Hastings, Neil Swainston, Venkatesh Muthukrishnan, Namrata Kale, Adriano Dekker, Gareth I. Owen, Steve Turner, Pedro Mendes, Christoph Steinbeck

Proceedings of the International Conference on Biomedical Ontology, 2015

2014

Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies.

Janna Hastings, Gwen A. Frishkoff, Barry Smith, Mark Jensen, Russell A. Poldrack, Jane Lomax, Anita E. Bandrowski, Fahim T. Imam, Jessica A. Turner, Maryann E. Martone

Frontiers Neuroinformatics, 2014

Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference.

Janna Hastings, Andy Brass, Colin Caine, Caroline Jay, Robert Stevens

J. Biomed. Semant., 2014

The first eNanoMapper prototype: A substance database to support safe-by-design.

Nina Jeliazkova, Philip Doganis, Bengt Fadeel, Roland Grafstrom, Janna Hastings, Vedrin Jeliazkov, Pekka Kohonen, Cristian R. Munteanu, Haralambos Sarimveis, Bart Smeets, Georgia Tsiliki, David Vorgrimmler, Egon L. Willighagen

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013

MetaboLights - an open-access general-purpose repository for metabolomics studies and associated meta-data.

Kenneth Haug, Reza M. Salek, Pablo Conesa, Janna Hastings, Paula de Matos, Mark Rijnbeek, Tejasvi Mahendraker, Mark Williams, Steffen Neumann, Philippe Rocca-Serra, Eamonn Maguire, Alejandra N. González-Beltrán, Susanna-Assunta Sansone, Julian L. Griffin, Christoph Steinbeck

Nucleic Acids Res., 2013

The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013.

Janna Hastings, Paula de Matos, Adriano Dekker, Marcus Ennis, Bhavana Harsha, Namrata Kale, Venkatesh Muthukrishnan, Gareth I. Owen, Steve Turner, Mark Williams, Christoph Steinbeck

Nucleic Acids Res., 2013

The ChEMBL database as linked open data.

Egon L. Willighagen, Andra Waagmeester, Ola Spjuth, Peter Ansell, Antony J. Williams, Valery Tkachenko, Janna Hastings, Bin Chen, David J. Wild

J. Cheminformatics, 2013

Expanding natural product chemistry resources at the EBI.

Janna Hastings, Pablo Conesa, Adriano Dekker, Marcus Ennis, Kenneth Haug, Kalai Vanii Jayaseelan, Namrata Kale, Tejasvi Mahendraker, Pablo A. Moreno, Venkatesh Muthukrishnan, Gareth I. Owen, Reza M. Salek, Steve Turner, Christoph Steinbeck

J. Cheminformatics, 2013

FMCS: a novel algorithm for the multiple MCS problem.

Andrew Dalke, Janna Hastings

J. Cheminformatics, 2013

UniChem: a unified chemical structure cross-referencing and identifier tracking system.

Jon Chambers, Mark Davies, Anna Gaulton, Anne Hersey, Sameer Velankar, Robert Petryszak, Janna Hastings, Louisa J. Bellis, Shaun McGlinchey, John P. Overington

J. Cheminformatics, 2013

OntoQuery: easy-to-use web-based OWL querying.

Ilinca Tudose, Janna Hastings, Venkatesh Muthukrishnan, Gareth I. Owen, Steve Turner, Adriano Dekker, Namrata Kale, Marcus Ennis, Christoph Steinbeck

Bioinform., 2013

Exploiting disjointness axioms to improve semantic similarity measures.

João D. Ferreira, Janna Hastings, Francisco M. Couto

Bioinform., 2013

The MetaboLights repository: curation challenges in metabolomics.

Reza M. Salek, Kenneth Haug, Pablo Conesa, Janna Hastings, Mark Williams, Tejasvi Mahendraker, Eamonn Maguire, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Susanna-Assunta Sansone, Christoph Steinbeck

Database J. Biol. Databases Curation, 2013

An Ontology for Drug-drug Interactions.

María Herrero-Zazo, Janna Hastings, Isabel Segura-Bedmar, Samuel Croset, Paloma Martínez, Christoph Steinbeck

Proceedings of the 6th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2013

Shape Perception in Chemistry.

Janna Hastings, Colin R. Batchelor, Mitsuhiro Okada

Proceedings of the Second Interdisciplinary Workshop The Shape of Things, 2013

2012

Structure-based classification and ontology in chemistry.

Janna Hastings, Despoina Magka, Colin R. Batchelor, Lian Duan, Robert Stevens, Marcus Ennis, Christoph Steinbeck

J. Cheminformatics, 2012

Structured chemical class definitions and automated matching for chemical ontology evolution.

Lian Duan, Janna Hastings, Paula de Matos, Marcus Ennis, Christoph Steinbeck

J. Cheminformatics, 2012

Cheminformatics.

Jörg K. Wegner, Aaron D. Sterling, Rajarshi Guha, Andreas Bender, Jean-Loup Faulon, Janna Hastings, Noel M. O'Boyle, John P. Overington, Herman van Vlijmen, Egon L. Willighagen

Commun. ACM, 2012

Self-organizing ontology of biochemically relevant small molecules.

Leonid L. Chepelev, Janna Hastings, Marcus Ennis, Christoph Steinbeck, Michel Dumontier

BMC Bioinform., 2012

Process attributes in bio-ontologies.

André Queiroz de Andrade, Ward Blondé, Janna Hastings, Stefan Schulz

BMC Bioinform., 2012

Wanting what we don't want to want: Representing addiction in interoperable bio-ontologies.

Janna Hastings, Nicolas Le Novère, Werner Ceusters, Kevin Mulligan, Barry Smith

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Modular Extensions to the ChEBI Ontology.

Janna Hastings, Paula de Matos, Adriano Dekker, Marcus Ennis, Venkatesh Muthukrishnan, Steve Turner, Gareth I. Owen, Christoph Steinbeck

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Waves and fields in bio-ontologies.

Colin R. Batchelor, Janna Hastings

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Modelling Highly Symmetrical Molecules: Linking Ontologies and Graphs.

Oliver Kutz, Janna Hastings, Till Mossakowski

Proceedings of the Artificial Intelligence: Methodology, Systems, and Applications, 2012

2011

Chemical ontologies: what are they, what are they for and what are the challenges.

Janna Hastings, Nico Adams, Marcus Ennis, Duncan Hull, Christoph Steinbeck

J. Cheminformatics, 2011

Unintended consequences of existential quantifications in biomedical ontologies.

Martin Boeker, Ilinca Tudose, Janna Hastings, Daniel Schober, Stefan Schulz

BMC Bioinform., 2011

Modularization Requirements in Bio-Ontologies: A Case Study of ChEbi.

Janna Hastings, Colin R. Batchelor, Christoph Steinbeck, Stefan Schulz

Proceedings of the Modular Ontologies - Proceedings of the Fifth International Workshop, 2011

Parts and Wholes, Shapes and Holes in Living Beings.

Janna Hastings, Colin R. Batchelor, Stefan Schulz

Proceedings of the First Interdisciplinary Workshop on SHAPES, 2011

Modelling Threshold Phenomena in OWL: Metabolite Concentrations as Evidence For Disorders.

Janna Hastings, Ludger Jansen, Christoph Steinbeck, Stefan Schulz

Proceedings of the 8th International Workshop on OWL: Experiences and Directions (OWLED 2011), 2011

A T-Box Generator for Testing Scalability of OWL Mereotopological Patterns.

Martin Boeker, Janna Hastings, Daniel Schober, Stefan Schulz

Proceedings of the 8th International Workshop on OWL: Experiences and Directions (OWLED 2011), 2011

Use of Multiple Ontologies to Characterize the Bioactivity of Small Molecules.

Ying Yan, Janna Hastings, Jee-Hyub Kim, Stefan Schulz, Christoph Steinbeck, Dietrich Rebholz-Schuhmann

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Hyperontology for the Biomedical Ontologist: A Sketch and Some Examples.

Oliver Kutz, Till Mossakowski, Janna Hastings, Alexander García Castro, Aleksandra Sojic

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Recent Developments in the ChEBI Ontology.

Janna Hastings, Paula de Matos, Adriano Dekker, Marcus Ennis, Kenneth Haug, Zara Josephs, Gareth I. Owen, Steve Turner, Christoph Steinbeck

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Dispositions and Processes in the Emotion Ontology.

Janna Hastings, Werner Ceusters, Barry Smith, Kevin Mulligan

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

What's in an 'is about' Link? Chemical Diagrams and the Information Artifact Ontology.

Janna Hastings, Colin R. Batchelor, Fabian Neuhaus, Christoph Steinbeck

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

The Emotion Ontology: Enabling Interdisciplinary Research in the Affective Sciences.

Janna Hastings, Werner Ceusters, Barry Smith, Kevin Mulligan

Proceedings of the Modeling and Using Context, 2011

2010

Chemical Entities of Biological Interest: an update.

Paula de Matos, Rafael Alcántara, Adriano Dekker, Marcus Ennis, Janna Hastings, Kenneth Haug, Inmaculada Spiteri, Steve Turner, Christoph Steinbeck

Nucleic Acids Res., 2010

ChEBI: a chemistry ontology and database.

Paula de Matos, Adriano Dekker, Marcus Ennis, Janna Hastings, Kenneth Haug, Steve Turner, Christoph Steinbeck

J. Cheminformatics, 2010

Representing Chemicals Using OWL, Description Graphs and Rules.

Janna Hastings, Michel Dumontier, Duncan Hull, Matthew Horridge, Christoph Steinbeck, Robert Stevens, Ulrike Sattler, Tertia Hörne, Katarina Britz

Proceedings of the 7th International Workshop on OWL: Experiences and Directions (OWLED 2010), 2010

What are chemical structures and their relations?

Janna Hastings, Colin R. Batchelor, Christoph Steinbeck, Stefan Schulz

Proceedings of the Formal Ontology in Information Systems, 2010

Ontological dependence, dispositions and institutional reality in chemistry.

Colin R. Batchelor, Janna Hastings, Christoph Steinbeck

Proceedings of the Formal Ontology in Information Systems, 2010

2009

Semantic access to chemistry data with the ChEBI ontology and web services.

Nico Adams, Paula de Matos, Adriano Dekker, Marcus Ennis, Janna Hastings, Kenneth Haug, Duncan Hull, Zara Josephs, Pablo A. Moreno, Steve Turner, Christoph Steinbeck

Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2009

2008

ChEBI: a database and ontology for chemical entities of biological interest.

Kirill Degtyarenko, Paula de Matos, Marcus Ennis, Janna Hastings, Martin Zbinden, Alan McNaught, Rafael Alcántara, Michael Darsow, Mickaël Guedj, Michael Ashburner

Nucleic Acids Res., 2008

The ChEBI Ontology: An Ontology for Chemistry within a Biological Context.

Janna Hastings, Kirill Degtyarenko, Paula de Matos, Marcus Ennis, Christoph Steinbeck

Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008