Jan Ludwiczak

According to our database, Jan Ludwiczak authored at least 7 papers between 2019 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models.

Kamil Kaminski, Jan Ludwiczak, Kamil Pawlicki, Vikram Alva, Stanislaw Dunin-Horkawicz

Bioinform., October, 2023

AbDiffuser: full-atom generation of in-vitro functioning antibodies.

Karolis Martinkus, Jan Ludwiczak, Wei-Ching Liang, Julien Lafrance-Vanasse, Isidro Hötzel, Arvind Rajpal, Yan Wu, Kyunghyun Cho, Richard Bonneau, Vladimir Gligorijevic, Andreas Loukas

Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

2022

<i>localpdb - </i>a Python package to manage protein structures and their annotations.

Jan Ludwiczak, Aleksander Winski, Stanislaw Dunin-Horkawicz

Bioinform., 2022

Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins.

Kamil Kaminski, Jan Ludwiczak, Maciej Jasinski, Adriana Bukala, Rafal Madaj, Krzysztof Szczepaniak, Stanislaw Dunin-Horkawicz

Briefings Bioinform., 2022

2021

A library of coiled-coil domains: from regular bundles to peculiar twists.

Krzysztof Szczepaniak, Adriana Bukala, Antonio Marinho da Silva Neto, Jan Ludwiczak, Stanislaw Dunin-Horkawicz

Bioinform., 2021

2020

Self-analysis of repeat proteins reveals evolutionarily conserved patterns.

Matthew Merski, Krzysztof Mlynarczyk, Jan Ludwiczak, Jakub Skrzeczkowski, Stanislaw Dunin-Horkawicz, Maria W. Górna

BMC Bioinform., 2020

2019

DeepCoil - a fast and accurate prediction of coiled-coil domains in protein sequences.

Jan Ludwiczak, Aleksander Winski, Krzysztof Szczepaniak, Vikram Alva, Stanislaw Dunin-Horkawicz

Bioinform., 2019