Jan Kirschke

Orcid: 0000-0002-7557-0003

According to our database1, Jan Kirschke authored at least 63 papers between 2016 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Bibliography

2024
Automated assessment of cardiac pathologies on cardiac MRI using T1-mapping and late gadolinium phase sensitive inversion recovery sequences with deep learning.
BMC Medical Imaging, December, 2024

ISLES 2024: The first longitudinal multimodal multi-center real-world dataset in (sub-)acute stroke.
CoRR, 2024

ISLES'24: Improving final infarct prediction in ischemic stroke using multimodal imaging and clinical data.
CoRR, 2024

Don't You (Project Around Discs)? Neural Network Surrogate and Projected Gradient Descent for Calibrating an Intervertebral Disc Finite Element Model.
CoRR, 2024

Counterfactual Explanations for Medical Image Classification and Regression using Diffusion Autoencoder.
CoRR, 2024

TotalVibeSegmentator: Full Torso Segmentation for the NAKO and UK Biobank in Volumetric Interpolated Breath-hold Examination Body Images.
CoRR, 2024

Enhancing Interpretability of Vertebrae Fracture Grading using Human-interpretable Prototypes.
CoRR, 2024

A Robust Ensemble Algorithm for Ischemic Stroke Lesion Segmentation: Generalizability and Clinical Utility Beyond the ISLES Challenge.
CoRR, 2024

Numerical simulation of individual coil placement - A proof-of-concept study for the prediction of recurrence after aneurysm coiling.
CoRR, 2024

SPINEPS - Automatic Whole Spine Segmentation of T2-weighted MR images using a Two-Phase Approach to Multi-class Semantic and Instance Segmentation.
CoRR, 2024

Numerical simulation of endovascular treatment options for cerebral aneurysms.
CoRR, 2024

2023
The Liver Tumor Segmentation Benchmark (LiTS).
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Medical Image Anal., 2023

Benchmarking the CoW with the TopCoW Challenge: Topology-Aware Anatomical Segmentation of the Circle of Willis for CTA and MRA.
CoRR, 2023

Panoptica - instance-wise evaluation of 3D semantic and instance segmentation maps.
CoRR, 2023

MedShapeNet - A Large-Scale Dataset of 3D Medical Shapes for Computer Vision.
CoRR, 2023

Denoising diffusion-based MR to CT image translation enables whole spine vertebral segmentation in 2D and 3D without manual annotations.
CoRR, 2023

Framing image registration as a landmark detection problem for better representation of clinical relevance.
CoRR, 2023

Inter-Rater Uncertainty Quantification in Medical Image Segmentation via Rater-Specific Bayesian Neural Networks.
CoRR, 2023

The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn).
CoRR, 2023

The Brain Tumor Segmentation (BraTS) Challenge 2023: Local Synthesis of Healthy Brain Tissue via Inpainting.
CoRR, 2023

Primitive Simultaneous Optimization of Similarity Metrics for Image Registration.
CoRR, 2023

Multi-contrast MRI Super-resolution via Implicit Neural Representations.
CoRR, 2023

Semantic Latent Space Regression of Diffusion Autoencoders for Vertebral Fracture Grading.
CoRR, 2023

Single-subject Multi-contrast MRI Super-resolution via Implicit Neural Representations.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

3D Arterial Segmentation via Single 2D Projections and Depth Supervision in Contrast-Enhanced CT Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

Pushing the Limits of an FCN and A CRF Towards Near-Ideal Vertebrae Labelling.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023


blob loss: Instance Imbalance Aware Loss Functions for Semantic Segmentation.
Proceedings of the Information Processing in Medical Imaging, 2023

2022
CheXplaining in Style: Counterfactual Explanations for Chest X-rays using StyleGAN.
CoRR, 2022

ISLES 2022: A multi-center magnetic resonance imaging stroke lesion segmentation dataset.
CoRR, 2022

Weakly-Supervised Biomechanically-Constrained CT/MRI Registration of the Spine.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

Interpretable Vertebral Fracture Diagnosis.
Proceedings of the Interpretability of Machine Intelligence in Medical Image Computing, 2022

Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2022

2021
VerSe: A Vertebrae labelling and segmentation benchmark for multi-detector CT images.
Medical Image Anal., 2021

AIFNet: Automatic vascular function estimation for perfusion analysis using deep learning.
Medical Image Anal., 2021

A Deep Learning Approach to Predicting Collateral Flow in Stroke Patients Using Radiomic Features from Perfusion Images.
CoRR, 2021

A Computed Tomography Vertebral Segmentation Dataset with Anatomical Variations and Multi-Vendor Scanner Data.
CoRR, 2021

Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient.
CoRR, 2021

Unpaired MR Image Homogenisation by Disentangled Representations and Its Uncertainty.
Proceedings of the Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Perinatal Imaging, Placental and Preterm Image Analysis, 2021

Patient-Specific Virtual Spine Straightening and Vertebra Inpainting: An Automatic Framework for Osteoplasty Planning.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

2020
VerSe: A Vertebrae Labelling and Segmentation Benchmark for Multi-detector CT Images.
CoRR, 2020

Reinforced Redetection of Landmark in Pre- and Post-operative Brain Scan Using Anatomical Guidance for Image Alignment.
Proceedings of the Biomedical Image Registration - 9th International Workshop, 2020

Differentiable Deconvolution for Improved Stroke Perfusion Analysis.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Robustification of Segmentation Models Against Adversarial Perturbations in Medical Imaging.
Proceedings of the Predictive Intelligence in Medicine - Third International Workshop, 2020

Reliable Saliency Maps for Weakly-Supervised Localization of Disease Patterns.
Proceedings of the Interpretable and Annotation-Efficient Learning for Medical Image Computing, 2020

Grading Loss: A Fracture Grade-Based Metric Loss for Vertebral Fracture Detection.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Inferring the 3D Standing Spine Posture from 2D Radiographs.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Cranial Implant Prediction Using Low-Resolution 3D Shape Completion and High-Resolution 2D Refinement.
Proceedings of the Towards the Automatization of Cranial Implant Design in Cranioplasty, 2020

2019
Adversarially Learning a Local Anatomical Prior: Vertebrae Labelling with 2D reformations.
CoRR, 2019

Probabilistic Point Cloud Reconstructions for Vertebral Shape Analysis.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

DiamondGAN: Unified Multi-modal Generative Adversarial Networks for MRI Sequences Synthesis.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Conditioned Variational Auto-encoder for Detecting Osteoporotic Vertebral Fractures.
Proceedings of the Computational Methods and Clinical Applications for Spine Imaging, 2019

Vertebral Labelling in Radiographs: Learning a Coordinate Corrector to Enforce Spinal Shape.
Proceedings of the Computational Methods and Clinical Applications for Spine Imaging, 2019

A Radiomics Approach to Traumatic Brain Injury Prediction in CT Scans.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

A Baseline for Predicting Glioblastoma Patient Survival Time with Classical Statistical Models and Primitive Features Ignoring Image Information.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2019

2018
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge.
CoRR, 2018

Robust and parallel scalable iterative solutions for large-scale finite cell analyses.
CoRR, 2018

DeepVesselNet: Vessel Segmentation, Centerline Prediction, and Bifurcation Detection in 3-D Angiographic Volumes.
CoRR, 2018

Btrfly Net: Vertebrae Labelling with Energy-Based Adversarial Learning of Local Spine Prior.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Multi-scale Convolutional-Stack Aggregation for Robust White Matter Hyperintensities Segmentation.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2018

2017
A Localisation-Segmentation Approach for Multi-label Annotation of Lumbar Vertebrae using Deep Nets.
CoRR, 2017

Attention-Driven Deep Learning for Pathological Spine Segmentation.
Proceedings of the Computational Methods and Clinical Applications in Musculoskeletal Imaging, 2017

2016
Uncertainty quantification in brain tumor segmentation using CRFs and random perturbation models.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016


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