Jan Aerts

According to our database, Jan Aerts authored at least 44 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Challenges and Opportunities in Data Visualization Education: A Call to Action.

Benjamin Bach, Mandy Keck, Fateme Rajabiyazdi, Tatiana Losev, Isabel Meirelles, Jason Dykes, Robert S. Laramee, Mashael AlKadi, Christina Stoiber, Samuel Huron, Charles Perin, Luiz Morais, Wolfgang Aigner, Doris Kosminsky, Magdalena Boucher, Søren Knudsen, Areti Manataki, Jan Aerts, Uta Hinrichs, Jonathan C. Roberts, Sheelagh Carpendale

IEEE Trans. Vis. Comput. Graph., January, 2024

Snowflake: visualizing microbiome abundance tables as multivariate bipartite graphs.

Jannes Peeters, Daniël M. Bot, Gustavo Alberto Rovelo Ruiz, Jan Aerts

Frontiers Bioinform., 2024

Lens functions for exploring UMAP Projections with Domain Knowledge.

Daniël M. Bot, Jan Aerts

CoRR, 2024

Synthetic plasma pool cohort correction for affinity-based proteomics datasets allows multiple study comparison.

Dries Heylen, Murih Pusparum, Jurgis Kuliesius, Jim Wilson, Young-Chan Park, Jacek Jamiolkowski, Valentino D'onofrio, Dirk Valkenborg, Jan Aerts, Gökhan Ertaylan, Jef Hooyberghs

Briefings Bioinform., 2024

Manifold Modelling with Minimum Spanning Trees.

Daniël M. Bot, Peiyang Huo, Alessio Arleo, Fernando V. Paulovich, Jan Aerts

Proceedings of the 26th Eurographics Conference on Visualization, 2024

2023

FLASC: A Flare-Sensitive Clustering Algorithm: Extending HDBSCAN* for Detecting Branches in Clusters.

Daniël M. Bot, Jannes Peeters, Jori Liesenborgs, Jan Aerts

CoRR, 2023

The Challenge of Branch-Aware Data Manifold Exploration.

Daniël M. Bot, Jannes Peeters, Jan Aerts

Proceedings of the 25th Eurographics Conference on Visualization, 2023

2022

Designing a Data Visualisation for Interdisciplinary Scientists. How to Transparently Convey Data Frictions?

Georgia Panagiotidou, Jeroen Poblome, Jan Aerts, Andrew Vande Moere

Comput. Support. Cooperative Work., 2022

MOBS - Multi-Omics Brush for Subgraph Visualisation.

Dries Heylen, Jannes Peeters, Gökhan Ertaylan, Jef Hooyberghs, Jan Aerts

Proceedings of the 24th Eurographics Conference on Visualization, 2022

2021

Spanning Trees as Approximation of Data Structures.

Daniel Alcaide, Jan Aerts

IEEE Trans. Vis. Comput. Graph., 2021

A visual analytic approach for the identification of ICU patient subpopulations using ICD diagnostic codes.

Daniel Alcaide, Jan Aerts

PeerJ Comput. Sci., 2021

Exploring the Microbiome Analysis and Visualization Landscape.

Jannes Peeters, Olivier Thas, Ziv Shkedy, Leyla Kodalci, Connie Musisi, Olajumoke Evangelina Owokotomo, Aleksandra Dyczko, Ibrahim Hamad, Jaco Vangronsveld, Markus Kleinewietfeld, Sofie Thijs, Jan Aerts

Frontiers Bioinform., 2021

Remote Instruction for Data Visualization Design - A Report From the Trenches.

Jan Aerts, Jannes Peeters, Jelmer Bot, Danai Kafetzaki, Houda Lamqaddam

IEEE Computer Graphics and Applications, 2021

TIEVis: a Visual Analytics Dashboard for Temporal Information Extracted from Clinical Reports.

Robin De Croon, Artuur Leeuwenberg, Jan Aerts, Marie-Francine Moens, Vero Vanden Abeele, Katrien Verbert

Proceedings of the IUI '21: 26th International Conference on Intelligent User Interfaces, 2021

2019

Improving the Projection of Global Structures in Data through Spanning Trees.

Daniel Alcaide, Jan Aerts

CoRR, 2019

GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks.

Thomas Moerman, Sara Aibar Santos, Carmen Bravo González-Blas, Jaak Simm, Yves Moreau, Jan Aerts, Stein Aerts

Bioinform., 2019

2018

Visualization of Biological Data - Crossroads (Dagstuhl Seminar 18161).

Jan Aerts, Nils Gehlenborg, Georgeta Elisabeta Marai, Kay Katja Nieselt

Dagstuhl Reports, 2018

NAHR: a visual representation of social networks as support for art history research.

Houda Lamqaddam, Jan Aerts, Koenraad Brosens, Katrien Verbert

Proceedings of the 10th Nordic Conference on Human-Computer Interaction, Oslo, 2018

Multilevel Visual Clustering Exploration for Incomplete Time-Series in Water Samples.

Daniel Alcaide, Jan Aerts

Proceedings of the 13th IEEE Conference on Visual Analytics Science and Technology, 2018

2017

MCLEAN: Multilevel Clustering Exploration As Network.

Daniel Alcaide, Jan Aerts

PeerJ Prepr., 2017

Interactive Visualization of Massive Location Data using Multi-Scale Trajectories.

Thomas De Bodt, Bart Adams, Jan Aerts

Proceedings of the 19th Eurographics Conference on Visualization, 2017

DaaG: Visual Analytics Clustering Using Network Representation.

Daniel Alcaide, Jan Aerts

Proceedings of the 19th Eurographics Conference on Visualization, 2017

2016

Candidate gene prioritization with Endeavour.

Léon-Charles Tranchevent, Amin Ardeshirdavani, Sarah ElShal, Daniel Alcaide, Jan Aerts, Didier Auboeuf, Yves Moreau

Nucleic Acids Res., 2016

InVITe - Towards Intuitive Visualization of Iterations over Text.

Houda Lamqaddam, Jan Aerts

Proceedings of the 18th Eurographics Conference on Visualization, 2016

2015

Highlights from the 5th Symposium on Biological Data Visualization: Part 1.

Jan Aerts, G. Elisabeta Marai, Kay Nieselt, Cydney B. Nielsen, Marc Streit, Daniel Weiskopf

BMC Bioinform., December, 2015

Card Sorting Techniques for Domain Characterization in Problem-driven Visualization Research.

Ryo Sakai, Jan Aerts

Proceedings of the 17th Eurographics Conference on Visualization, 2015

2014

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

Toshiaki Katayama, Mark D. Wilkinson, Kiyoko F. Aoki-Kinoshita, Shuichi Kawashima, Yasunori Yamamoto, Atsuko Yamaguchi, Shinobu Okamoto, Shin Kawano, Jin-Dong Kim, Yue Wang, Hongyan Wu, Yoshinobu Kano, Hiromasa Ono, Hidemasa Bono, Simon Kocbek, Jan Aerts, Yukie Akune, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Pier Luigi Buttigieg, Matthew P. Campbell, Yi-an Chen, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Alexandru Constantin

J. Biomed. Semant., 2014

A three step process to design visualisations for GeoTemporal analysis (VAST 2014 Mini Challenge 2).

Alvin Chua, Ryo Sakai, Jan Aerts, Andrew Vande Moere

Proceedings of the 9th IEEE Conference on Visual Analytics Science and Technology, 2014

A Self-Tuning Genetic Algorithm with Applications in Biomarker Discovery.

Dusan Popovic, Charalampos N. Moschopoulos, Ryo Sakai, Alejandro Sifrim, Jan Aerts, Yves Moreau, Bart De Moor

Proceedings of the 2014 IEEE 27th International Symposium on Computer-Based Medical Systems, 2014

2013

TrioVis: a visualization approach for filtering genomic variants of parent-child trios.

Ryo Sakai, Alejandro Sifrim, Andrew Vande Moere, Jan Aerts

Bioinform., 2013

Pipit: visualizing functional impacts of structural variations.

Ryo Sakai, Matthieu Moisse, Joke Reumers, Jan Aerts

Bioinform., 2013

Unraveling genomic variation from next generation sequencing data.

Georgios A. Pavlopoulos, Anastasis Oulas, Ernesto Iacucci, Alejandro Sifrim, Yves Moreau, Reinhard Schneider, Jan Aerts, Ioannis Iliopoulos

BioData Min., 2013

2012

Changing computational research. The challenges ahead.

Cameron Neylon, Jan Aerts, C. Titus Brown, Simon J. Coles, Les Hatton, Daniel Lemire, K. Jarrod Millman, Peter Murray-Rust, Fernando Pérez, Neil F. W. Saunders, Nigam Shah, Arfon M. Smith, Gaël Varoquaux, Egon L. Willighagen

Source Code Biol. Medicine, 2012

Arena3D: visualizing time-driven phenotypic differences in biological systems.

Maria Secrier, Georgios A. Pavlopoulos, Jan Aerts, Reinhard Schneider

BMC Bioinform., 2012

The Ruby UCSC API: accessing the UCSC genome database using Ruby.

Hiroyuki Mishima, Jan Aerts, Toshiaki Katayama, Raoul Jean Pierre Bonnal, Koh-ichiro Yoshiura

BMC Bioinform., 2012

An eQTL biological data visualization challenge and approaches from the visualization community.

Christopher W. Bartlett, Soo Yeon Cheong, Liping Hou, Jesse Paquette, Pek Yee Lum, Günter Jäger, Florian Battke, Corinna Vehlow, Julian Heinrich, Kay Nieselt, Ryo Sakai, Jan Aerts, William C. Ray

BMC Bioinform., 2012

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.

Raoul Jean Pierre Bonnal, Jan Aerts, George Githinji, Naohisa Goto, Daniel MacLean, Chase A. Miller, Hiroyuki Mishima, Massimiliano Pagani, Ricardo Ramirez-Gonzalez, Geert Smant, Francesco Strozzi, Rob Syme, Rutger A. Vos, Trevor J. Wennblom, Ben J. Woodcroft, Toshiaki Katayama, Pjotr Prins

Bioinform., 2012

Visualizing high dimensional datasets using parallel coordinates: Application to gene prioritization.

Thomas Boogaerts, Léon-Charles Tranchevent, Georgios A. Pavlopoulos, Jan Aerts, Joos Vandewalle

Proceedings of the 12th IEEE International Conference on Bioinformatics & Bioengineering, 2012

2011

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.

Toshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul Jean Pierre Bonnal, José María Fernández, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd W. Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, E. Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas H. Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi

J. Biomed. Semant., 2011

A Ruby API to query the Ensembl database for genomic features.

Francesco Strozzi, Jan Aerts

Bioinform., 2011

Using graph theory to analyze biological networks.

Georgios A. Pavlopoulos, Maria Secrier, Charalampos N. Moschopoulos, Theodoros G. Soldatos, Sophia Kossida, Jan Aerts, Reinhard Schneider, Pantelis G. Bagos

BioData Min., 2011

2010

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.

Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi

J. Biomed. Semant., 2010

BioRuby: bioinformatics software for the Ruby programming language.

Naohisa Goto, Pjotr Prins, Mitsuteru Nakao, Raoul Jean Pierre Bonnal, Jan Aerts, Toshiaki Katayama

Bioinform., 2010

2009

An introduction to scripting in Ruby for biologists.

Jan Aerts, Andy Law

BMC Bioinform., 2009