James T. Yurkovich

According to our database, James T. Yurkovich authored at least 12 papers between 2016 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

A framework towards digital twins for type 2 diabetes.

Yue Zhang, Guangrong Qin, Boris Aguilar, Noa Rappaport, James T. Yurkovich, Lance Pflieger, Sui Huang, Leroy Hood, Ilya Shmulevich

Frontiers Digit. Health, 2024

2021

MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics.

Zachary B. Haiman, Daniel C. Zielinski, Yuko Koike, James T. Yurkovich, Bernhard O. Palsson

PLoS Comput. Biol., 2021

2020

BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree.

Charles J. Norsigian, Neha Pusarla, John Luke McConn, James T. Yurkovich, Andreas Dräger, Bernhard O. Palsson, Zachary A. King

Nucleic Acids Res., 2020

Visualizing metabolic network dynamics through time-series metabolomic data.

Lea Buchweitz, James T. Yurkovich, Christoph Blessing, Veronika Kohler, Fabian Schwarzkopf, Zachary A. King, Laurence Yang, Freyr Jóhannsson, Ólafur E. Sigurjónsson, Ottar Rolfsson, Julian Heinrich, Andreas Dräger

BMC Bioinform., 2020

2018

The Systems Biology of Red Cell Metabolism: Physiology under Storage Conditions

James T. Yurkovich

PhD thesis, 2018

Network-level allosteric effects are elucidated by detailing how ligand-binding events modulate utilization of catalytic potentials.

James T. Yurkovich, Miguel A. Alcantar, Zachary B. Haiman, Bernhard O. Palsson

PLoS Comput. Biol., 2018

Systems biology as an emerging paradigm in transfusion medicine.

James T. Yurkovich, Aarash Bordbar, Ólafur E. Sigurjónsson, Bernhard O. Palsson

BMC Syst. Biol., 2018

Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions.

Erol S. Kavvas, Yara Seif, James T. Yurkovich, Charles J. Norsigian, Saugat Poudel, William W. Greenwald, Sankha Ghatak, Bernhard O. Palsson, Jonathan M. Monk

BMC Syst. Biol., 2018

2017

Biomarkers are used to predict quantitative metabolite concentration profiles in human red blood cells.

James T. Yurkovich, Laurence Yang, Bernhard O. Palsson

PLoS Comput. Biol., 2017

Utilizing biomarkers to forecast quantitative metabolite concentration profiles in human red blood cells.

James T. Yurkovich, Laurence Yang, Bernhard O. Palsson

Proceedings of the IEEE Conference on Control Technology and Applications, 2017

2016

Toward Community Standards and Software for Whole-Cell Modeling.

Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber

IEEE Trans. Biomed. Eng., 2016

Solving Puzzles With Missing Pieces: The Power of Systems Biology [Point of View].

James T. Yurkovich, Bernhard O. Palsson

Proc. IEEE, 2016