James M. Tiedje

According to our database, James M. Tiedje authored at least 16 papers between 1999 and 2018.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2018

The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level.

Luis Miguel Rodriguez-Rojas, Santosh Gunturu, William T. Harvey, Ramon Rosselló-Mora, James M. Tiedje, James R. Cole, Konstantinos T. Konstantinidis

Nucleic Acids Res., 2018

ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes.

Xiaole Yin, Xiaotao Jiang, Benli Chai, Liguan Li, Ying Yang, James R. Cole, James M. Tiedje, Tong Zhang

Bioinform., 2018

2016

ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database.

Ying Yang, Xiaotao Jiang, Benli Chai, Liping Ma, Bing Li, Anni Zhang, James R. Cole, James M. Tiedje, Tong Zhang

Bioinform., 2016

2014

Ribosomal Database Project: data and tools for high throughput rRNA analysis.

James R. Cole, Qiong Wang, Jordan A. Fish, Benli Chai, Donna M. McGarrell, Yanni Sun, C. Titus Brown, Andrea Porras-Alfaro, Cheryl R. Kuske, James M. Tiedje

Nucleic Acids Res., 2014

2012

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs.

Jason Pell, Arend Hintze, Rosangela Canino-Koning, Adina Howe, James M. Tiedje, C. Titus Brown

Proc. Natl. Acad. Sci. USA, 2012

Workshop: Graph compression approaches in assembly.

Jason Pell, Arend Hintze, Rosangela Canino-Koning, Adina Howe, James M. Tiedje, C. Titus Brown

Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

2010

DNA encoding for an efficient 'Omics processing.

Bostjan Murovec, James M. Tiedje, Blaz Stres

Comput. Methods Programs Biomed., 2010

2009

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis.

James R. Cole, Qiong Wang, E. Cardenas, Jordan A. Fish, Benli Chai, Ryan J. Farris, A. S. Kulam-Syed-Mohideen, Donna M. McGarrell, Terry L. Marsh, George M. Garrity, James M. Tiedje

Nucleic Acids Res., 2009

BEsTRF: a tool for optimal resolution of terminal-restriction fragment length polymorphism analysis based on user-defined primer-enzyme-sequence databases.

Blaz Stres, James M. Tiedje, Bostjan Murovec

Bioinform., 2009

2007

The ribosomal database project (RDP-II): introducing <i>myRDP</i> space and quality controlled public data.

James R. Cole, Benli Chai, Ryan J. Farris, Qiong Wang, A. S. Kulam-Syed-Mohideen, Donna M. McGarrell, A. M. Bandela, E. Cardenas, George M. Garrity, James M. Tiedje

Nucleic Acids Res., 2007

2005

The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis.

James R. Cole, Benli Chai, Ryan J. Farris, Qiong Wang, S. A. Kulam, Donna M. McGarrell, George M. Garrity, James M. Tiedje

Nucleic Acids Res., 2005

2003

BSD: the Biodegradative Strain Database.

John W. Urbance, James R. Cole, Paul Saxman, James M. Tiedje

Nucleic Acids Res., 2003

The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy.

James R. Cole, Benli Chai, Terry L. Marsh, Ryan J. Farris, Qiong Wang, S. A. Kulam, S. Chandra, Donna M. McGarrell, Thomas M. Schmidt, George M. Garrity, James M. Tiedje

Nucleic Acids Res., 2003

2001

The RDP-II (Ribosomal Database Project).

Bonnie L. Maidak, James R. Cole, Timothy G. Lilburn, Charles T. Parker Jr., Paul Saxman, Ryan J. Farris, George M. Garrity, Gary J. Olsen, Thomas M. Schmidt, James M. Tiedje

Nucleic Acids Res., 2001

2000

The RDP (Ribosomal Database Project) continues.

Bonnie L. Maidak, James R. Cole, Timothy G. Lilburn, Charles T. Parker Jr., Paul Saxman, Jason M. Stredwick, George M. Garrity, Bing Li, Gary J. Olsen, Sakti Pramanik, Thomas M. Schmidt, James M. Tiedje

Nucleic Acids Res., 2000

1999

A new version of the RDP (Ribosomal Database Project).

Bonnie L. Maidak, James R. Cole, Charles T. Parker Jr., George M. Garrity, Niels Larsen, Bing Li, Timothy G. Lilburn, Michael J. McCaughey, Gary J. Olsen, Ross A. Overbeek, Sakti Pramanik, Thomas M. Schmidt, James M. Tiedje, Carl R. Woese

Nucleic Acids Res., 1999