James M. Osborne

According to our database, James M. Osborne authored at least 22 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Advancements in multicellular simulations.

Domenic P. J. Germano, James M. Osborne

Nat. Comput. Sci., May, 2024

2023

Mathematical models of developmental vascular remodelling: A review.

Jessica R. Crawshaw, Jennifer A. Flegg, Miguel O. Bernabeu, James M. Osborne

PLoS Comput. Biol., 2023

Editorial: Do individuals matter? - Individual-based versus population-based models applied to biology and health.

Ivo Siekmann, James M. Osborne

Frontiers Appl. Math. Stat., 2023

2022

Multiscale modelling of desquamation in the interfollicular epidermis.

Claire Miller, Edmund J. Crampin, James M. Osborne

PLoS Comput. Biol., 2022

Publisher Correction: A rigid body framework for multicellular modeling.

Phillip J. Brown, J. Edward F. Green, Benjamin J. Binder, James M. Osborne

Nat. Comput. Sci., 2022

A simple history-dependent remeshing technique to increase finite element model stability in elastic surface deformations.

Jessica R. Crawshaw, Jennifer A. Flegg, James M. Osborne

J. Comput. Appl. Math., 2022

2021

A rigid body framework for multicellular modeling.

Phillip J. Brown, J. Edward F. Green, Benjamin J. Binder, James M. Osborne

Nat. Comput. Sci., 2021

2020

A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness.

T. J. Sego, Josua Aponte-Serrano, Juliano Ferrari Gianlupi, Samuel R. Heaps, Kira Breithaupt, Lutz Brusch, Jessica R. Crawshaw, James M. Osborne, Ellen M. Quardokus, Richard K. Plemper, James A. Glazier

PLoS Comput. Biol., 2020

Chaste: Cancer, Heart and Soft Tissue Environment.

Fergus R. Cooper, Ruth E. Baker, Miguel O. Bernabeu, Rafel Bordas, Louise Bowler, Alfonso Bueno-Orovio, Helen M. Byrne, Valentina Carapella, Louie Cardone-Noott, Jonathan Cooper, Sara Dutta, Benjamin D. Evans, Alexander G. Fletcher, James A. Grogan, Wenxian Guo, Daniel G. Harvey, Maurice Hendrix, David Kay, Jochen Kursawe, Philip K. Maini, Beth McMillan, Gary R. Mirams, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, Martin Robinson, Blanca Rodríguez, Raymond J. Spiteri, David Gavaghan

J. Open Source Softw., 2020

Modelling the effect of subcellular mutations on the migration of cells in the colorectal crypt.

Lotte B. Romijn, Axel A. Almet, Chin Wee Tan, James M. Osborne

BMC Bioinform., 2020

2018

A Fully Discrete Open Source Framework for the Simulation of Vascular Remodelling.

James M. Osborne, Miguel O. Bernabeu

Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018

2017

Comparing individual-based approaches to modelling the self-organization of multicellular tissues.

James M. Osborne, Alexander G. Fletcher, Joe Pitt-Francis, Philip K. Maini, David J. Gavaghan

PLoS Comput. Biol., 2017

The role of the Hes1 crosstalk hub in Notch-Wnt interactions of the intestinal crypt.

Sophie K. Kay, Heather A. Harrington, Sarah Shepherd, Keith Brennan, Trevor Dale, James M. Osborne, David J. Gavaghan, Helen M. Byrne

PLoS Comput. Biol., 2017

2015

Ten Simple Rules for a Successful Cross-Disciplinary Collaboration.

Bernhard Knapp, Rémi Bardenet, Miguel O. Bernabeu, Rafel Bordas, Maria Bruna, Ben Calderhead, Jonathan Cooper, Alexander G. Fletcher, Derek Groen, Bram Kuijper, Joanna Lewis, Greg J. McInerny, Timo Minssen, James M. Osborne, Verena Paulitschke, Joe Pitt-Francis, Jelena Todoric, Christian A. Yates, David Gavaghan, Charlotte M. Deane

PLoS Comput. Biol., 2015

A parallel implementation of an off-lattice individual-based model of multicellular populations.

Daniel G. Harvey, Alexander G. Fletcher, James M. Osborne, Joe Pitt-Francis

Comput. Phys. Commun., 2015

Software development practices in academia: a case study comparison.

Derek Groen, Xiaohu Guo, James A. Grogan, Ulf D. Schiller, James M. Osborne

CoRR, 2015

2014

Ten Simple Rules for Effective Computational Research.

James M. Osborne, Miguel O. Bernabeu, Maria Bruna, Ben Calderhead, Jonathan Cooper, Neil Dalchau, Sara-Jane Dunn, Alexander G. Fletcher, Robin Freeman, Derek Groen, Bernhard Knapp, Greg J. McInerny, Gary R. Mirams, Joe Pitt-Francis, Biswa Sengupta, David W. Wright, Christian A. Yates, David Gavaghan, Stephen Emmott, Charlotte M. Deane

PLoS Comput. Biol., 2014

The Free Energy Landscape of Dimerization of a Membrane Protein, NanC.

Thomas A. Dunton, Joseph E. Goose, David J. Gavaghan, Mark S. P. Sansom, James M. Osborne

PLoS Comput. Biol., 2014

2013

Chaste: An Open Source C++ Library for Computational Physiology and Biology.

Gary R. Mirams, Christopher J. Arthurs, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alberto Corrias, Yohan Davit, Sara-Jane Dunn, Alexander G. Fletcher, Daniel G. Harvey, Megan E. Marsh, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, James Southern, Nejib Zemzemi, David Gavaghan

PLoS Comput. Biol., 2013

Connecting Models to Data in Multiscale Multicellular Tissue Simulations.

Jonathan Cooper, James M. Osborne

Proceedings of the International Conference on Computational Science, 2013

2012

A Two-Dimensional Model of the Colonic Crypt Accounting for the Role of the Basement Membrane and Pericryptal Fibroblast Sheath.

Sara-Jane Dunn, Paul L. Appleton, Scott A. Nelson, Inke S. Näthke, David Gavaghan, James M. Osborne

PLoS Comput. Biol., 2012

2009

Chaste: A test-driven approach to software development for biological modelling.

Joe Pitt-Francis, Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alexander G. Fletcher, Gary R. Mirams, Philip J. Murray, James M. Osborne, Alex Walter, S. Jonathan Chapman, Alan Garny, Ingeborg M. M. van Leeuwen, Philip K. Maini, Blanca Rodríguez, Sarah L. Waters, Jonathan P. Whiteley, Helen M. Byrne, David Gavaghan

Comput. Phys. Commun., 2009