James G. Mork

According to our database, James G. Mork authored at least 54 papers between 1999 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

The National Library of Medicine indexer assignment dataset: A new large-scale dataset for reviewer assignment research.

Alastair R. Rae, James G. Mork, Dina Demner-Fushman

J. Assoc. Inf. Sci. Technol., February, 2023

The road from manual to automatic semantic indexing of biomedical literature: a 10 years journey.

Anastasia Krithara, James G. Mork, Anastasios Nentidis, Georgios Paliouras

Frontiers Res. Metrics Anal., 2023

2021

Proper filter usage to retrieve multiwords from the MEDLINE n-gram set: Reply to the Turki et al commentary "Enhancing filter-based parenthetic abbreviation extraction methods".

Chris J. Lu, Amanda Payne, James G. Mork

J. Am. Medical Informatics Assoc., 2021

A Neural Text Ranking Approach for Automatic MeSH Indexing.

Alastair R. Rae, James G. Mork, Dina Demner-Fushman

Proceedings of the Working Notes of CLEF 2021 - Conference and Labs of the Evaluation Forum, Bucharest, Romania, September 21st - to, 2021

Identifying Criteria for Antonym Generation from Collocates in Corpora.

Chris J. Lu, Amanda Payne, James G. Mork

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Hybrid Ensemble-Rule Algorithm for Improved MEDLINE® Sentence Boundary Detection.

Daniel X. Le, James G. Mork, Sameer Antani

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Using Deep Neural Network Binary Classifiers to Infer MeSH Publication Types.

Victor Cid, James G. Mork

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Automatic recognition of figurative language in biomedical articles.

Dina Demner-Fushman, Willie J. Rogers, James G. Mork

Proceedings of the Workshop on Scientific Document Understanding co-located with 35th AAAI Conference on Artificial Inteligence, 2021

2020

The Unified Medical Language System SPECIALIST Lexicon and Lexical Tools: Development and applications.

Chris J. Lu, Amanda Payne, James G. Mork

J. Am. Medical Informatics Assoc., 2020

Automatic MeSH Indexing: Revisiting the Subheading Attachment Problem.

Alastair R. Rae, David O. Pritchard, James G. Mork, Dina Demner-Fushman

Proceedings of the AMIA 2020, 2020

Enhanced Features in the SPECIALIST Lexicon - Antonyms.

Chris J. Lu, Amanda Payne, James G. Mork

Proceedings of the AMIA 2020, 2020

2019

Convolutional Neural Network for Automatic MeSH Indexing.

Alastair R. Rae, James G. Mork, Dina Demner-Fushman

Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2019

Evaluation of System for Selective Indexing Classification.

Max E. Savery, Melanie Huston, James G. Mork, Olga Printseva, Susan Schmidt, Alastair R. Rae, Dina Demner-Fushman

Proceedings of the AMIA 2019, 2019

A High Recall Classifier for Selecting Articles for MEDLINE Indexing.

Alastair R. Rae, Max E. Savery, James G. Mork, Dina Demner-Fushman

Proceedings of the AMIA 2019, 2019

2018

Increasing UMLS Coverage and Reducing Ambiguity via Automated Creation of Synonymous Terms.

François-Michel Lang, James G. Mork, Dina Demner-Fushman, Alan R. Aronson

Proceedings of the AMIA 2018, 2018

Finding medication doses in the literature.

Dina Demner-Fushman, James G. Mork, Willie J. Rogers, Sonya E. Shooshan, Laritza M. Rodriguez, Alan R. Aronson

Proceedings of the AMIA 2018, 2018

2017

12 years on - Is the NLM medical text indexer still useful and relevant?

James G. Mork, Alan R. Aronson, Dina Demner-Fushman

J. Biomed. Semant., 2017

2016

Resolving Hierarchical Ambiguity in Indexing Recommendations.

James G. Mork, Dina Demner-Fushman

Proceedings of the AMIA 2016, 2016

2015

Feature engineering for MEDLINE citation categorization with MeSH.

Antonio Jimeno-Yepes, Laura Plaza, Jorge Carrillo de Albornoz, James G. Mork, Alan R. Aronson

BMC Bioinform., 2015

Extracting Characteristics of the Study Subjects from Full-Text Articles.

Dina Demner-Fushman, James G. Mork

Proceedings of the AMIA 2015, 2015

2014

Recent Enhancements to the NLM Medical Text Indexer.

James G. Mork, Dina Demner-Fushman, Susan Schmidt, Alan R. Aronson

Proceedings of the Working Notes for CLEF 2014 Conference, 2014

Vocabulary Density Method for Customized Indexing of MEDLINE Journals.

James G. Mork, Dina Demner-Fushman, Susan Schmidt, Alan R. Aronson

Proceedings of the AMIA 2014, 2014

2013

GeneRIF indexing: sentence selection based on machine learning.

Antonio Jimeno-Yepes, J. Caitlin Sticco, James G. Mork, Alan R. Aronson

BMC Bioinform., 2013

MeSH indexing based on automatically generated summaries.

Antonio José Jimeno-Yepes, Laura Plaza, James G. Mork, Alan R. Aronson, Alberto Díaz

BMC Bioinform., 2013

The NLM Medical Text Indexer System for Indexing Biomedical Literature.

James G. Mork, Antonio Jimeno-Yepes, Alan R. Aronson

Proceedings of the first Workshop on Bio-Medical Semantic Indexing and Question Answering, 2013

Identifying Publication Types Using Machine Learning.

Antonio Jimeno-Yepes, James G. Mork, Alan R. Aronson

Proceedings of the first Workshop on Bio-Medical Semantic Indexing and Question Answering, 2013

Using the Argumentative Structure of Scientific Literature to Improve Information Access.

Antonio Jimeno-Yepes, James G. Mork, Alan R. Aronson

Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, 2013

Comparison and combination of several MeSH indexing approaches.

Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson

Proceedings of the AMIA 2013, 2013

Mining MEDLINE for problems associated with vitamin D.

Dina Demner-Fushman, James G. Mork, Alan R. Aronson

Proceedings of the AMIA 2013, 2013

2012

A One-Size-Fits-All Indexing Method Does Not Exist: Automatic Selection Based on Meta-Learning.

Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson

J. Comput. Sci. Eng., 2012

NLM at TREC 2012 Medical Records Track.

Dina Demner-Fushman, Swapna Abhyankar, Antonio Jimeno-Yepes, Russell F. Loane, François-Michel Lang, James G. Mork, Nicolas Ide, Alan R. Aronson

Proceedings of The Twenty-First Text REtrieval Conference, 2012

MEDLINE MeSH indexing: lessons learned from machine learning and future directions.

Antonio Jimeno-Yepes, James G. Mork, Bartlomiej Wilkowski, Dina Demner-Fushman, Alan R. Aronson

Proceedings of the ACM International Health Informatics Symposium, 2012

Structured Abstracts in MEDLINE: Implementation Based on a Retrospective Cohort Study.

Anna Ripple, Lou Knecht, John Rozier, James G. Mork

Proceedings of the AMIA 2012, 2012

2010

UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text.

Dina Demner-Fushman, James G. Mork, Sonya E. Shooshan, Alan R. Aronson

J. Biomed. Informatics, 2010

Extracting Rx information from clinical narrative.

James G. Mork, Olivier Bodenreider, Dina Demner-Fushman, Rezarta Islamaj Dogan, François-Michel Lang, Zhiyong Lu, Aurélie Névéol, Lee B. Peters, Sonya E. Shooshan, Alan R. Aronson

J. Am. Medical Informatics Assoc., 2010

2009

A recent advance in the automatic indexing of the biomedical literature.

Aurélie Névéol, Sonya E. Shooshan, Susanne M. Humphrey, James G. Mork, Alan R. Aronson

J. Biomed. Informatics, 2009

Comment on 'MeSH-up: effective MeSH text classification for improved document retrieval'.

Aurélie Névéol, James G. Mork, Alan R. Aronson

Bioinform., 2009

2008

Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing.

Alan R. Aronson, James G. Mork, Aurélie Névéol, Sonya E. Shooshan, Dina Demner-Fushman

Proceedings of the AMIA 2008, 2008

2007

Combining Resources to Find Answers to Biomedical Questions.

Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, James G. Mork, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, W. John Wilbur, Alan R. Aronson

Proceedings of The Sixteenth Text REtrieval Conference, 2007

Automatic Indexing of Specialized Documents: Using Generic vs. Domain-Specific Document Representations.

Aurélie Névéol, James G. Mork, Alan R. Aronson

Proceedings of the Biological, translational, and clinical language processing, 2007

From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches.

Alan R. Aronson, Olivier Bodenreider, Dina Demner-Fushman, Kin Wah Fung, Vivian K. Lee, James G. Mork, Aurélie Névéol, Lee B. Peters, Willie J. Rogers

Proceedings of the Biological, translational, and clinical language processing, 2007

Fine-Grained Indexing of the Biomedical Literature: MeSH Subheading Attachment for a MEDLINE Indexing Tool.

Aurélie Névéol, Sonya E. Shooshan, James G. Mork, Alan R. Aronson

Proceedings of the AMIA 2007, 2007

2005

Evaluation of French and English MeSH Indexing Systems with a Parallel Corpus.

Aurélie Névéol, James G. Mork, Alan R. Aronson, Stéfan Jacques Darmoni

Proceedings of the AMIA 2005, 2005

2004

Knowledge-Intensive and Statistical Approaches to the Retrieval and Annotation of Genomics MEDLINE Citations.

Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Won Kim, Russell F. Loane, James G. Mork, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Natalie Xie, Dina Demner-Fushman, Hongfang Liu

Proceedings of the Thirteenth Text REtrieval Conference, 2004

Application of a Medical Text Indexer to an Online Dermatology Atlas.

George R. Kim, Alan R. Aronson, James G. Mork, Bernard A. Cohen, Christoph U. Lehmann

Proceedings of the MEDINFO 2004, 2004

The NLM Indexing Initiative's Medical Text Indexer.

Alan R. Aronson, James G. Mork, Clifford W. Gay, Susanne M. Humphrey, Willie J. Rogers

Proceedings of the MEDINFO 2004, 2004

2003

Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics.

Mehmet Kayaalp, Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Lorraine K. Tanabe, Lawrence H. Smith, Dina Demner-Fushman, Russell F. Loane, James G. Mork, Olivier Bodenreider

Proceedings of The Twelfth Text REtrieval Conference, 2003

Gene Indexing: Characterization and Analysis of NLM's GeneRIFs.

Joyce A. Mitchell, Alan R. Aronson, James G. Mork, Lillian C. Folk, Susanne M. Humphrey, Janice M. Ward

Proceedings of the AMIA 2003, 2003

2002

Finding UMLS Metathesaurus concepts in MEDLINE.

Suresh Srinivasan, Thomas C. Rindflesch, William T. Hole, Alan R. Aronson, James G. Mork

Proceedings of the AMIA 2002, 2002

2001

Developing a test collection for biomedical word sense disambiguation.

Marc Weeber, James G. Mork, Alan R. Aronson

Proceedings of the AMIA 2001, 2001

2000

Text-based discovery in biomedicine: the architecture of the DAD-system.

Marc Weeber, Henny Klein, Alan R. Aronson, James G. Mork, Lolkje T. W. de Jong-van den Berg, Rein Vos

Proceedings of the AMIA 2000, 2000

The NLM Indexing Initiative.

Alan R. Aronson, Olivier Bodenreider, Florence Chang, Susanne M. Humphrey, James G. Mork, Stuart J. Nelson, Thomas C. Rindflesch, W. John Wilbur

Proceedings of the AMIA 2000, 2000

1999

Analysis of biomedical text for chemical names: a comparison of three methods.

W. John Wilbur, George F. Hazard Jr., Guy Divita, James G. Mork, Alan R. Aronson, Allen C. Browne

Proceedings of the AMIA 1999, 1999

Automated Assignment of Medical Subject Headings.

Stuart J. Nelson, Alan R. Aronson, Tamas E. Doszkocs, W. John Wilbur, Olivier Bodenreider, H. Florence Chang, James G. Mork, Alexa T. McCray

Proceedings of the AMIA 1999, 1999