James E. Galagan

According to our database, James E. Galagan authored at least 11 papers between 2005 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2019

RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12.

Alberto Santos-Zavaleta, Heladia Salgado, Socorro Gama-Castro, Mishael Sánchez-Pérez, Laura Gómez-Romero, Daniela Ledezma-Tejeida, Jair Santiago García-Sotelo, Kevin Alquicira-Hernández, Luis Muñiz-Rascado, Pablo Peña-Loredo, Cecilia Ishida-Gutiérrez, David A. Velázquez-Ramírez, Victor del Moral-Chávez, César Bonavides-Martínez, Carlos-Francisco Méndez-Cruz, James E. Galagan, Julio Collado-Vides

Nucleic Acids Res., 2019

2017

Coordinated regulation of acid resistance in Escherichia coli.

Patricia Aquino, Brent Honda, Suma Jaini, Anna Lyubetskaya, Krutika Hosur, Joanna G. Chiu, Iriny Ekladious, Dongjian Hu, Lin Jin, Marianna K. Sayeg, Arion Stettner, Julia Wang, Brandon G. Wong, Winnie S. Wong, Stephen L. Alexander, Cong Ba, Seth I. Bensussen, David B. Bernstein, Dana Braff, Susie Cha, Daniel I. Cheng, Jang-Hwan Cho, Kenny Chou, James Chuang, Daniel E. Gastler, Daniel J. Grasso, John S. Greifenberger, Chen Guo, Anna K. Hawes, Divya V. Israni, Saloni R. Jain, Jessica Kim, Junyu Lei, Hao Li, David Li, Qian Li, Christopher P. Mancuso, Ning Mao, Salwa F. Masud, Cari L. Meisel, Jing Mi, Christine S. Nykyforchyn, Minhee Park, Hannah M. Peterson, Alfred K. Ramirez, Daniel S. Reynolds, Nae Gyune Rim, Jared C. Saffie, Hang Su, Wendell R. Su, Yaqing Su, Meng Sun, Meghan M. Thommes, Tao Tu, Nitinun Varongchayakul, Tyler E. Wagner, Benjamin H. Weinberg, Rouhui Yang, Anastasia Yaroslavsky, Christine Yoon, Yanyu Zhao, Alicia J. Zollinger, Anne M. Stringer, John W. Foster, Joseph Wade, Sahadaven Raman, Natasha Broude, Wilson W. Wong, James E. Galagan

BMC Syst. Biol., 2017

2015

Metabolic modeling predicts metabolite changes in Mycobacterium tuberculosis.

Christopher Garay, Jonathan M. Dreyfuss, James E. Galagan

BMC Syst. Biol., 2015

2014

Learning Modular Structures from Network Data and Node Variables.

Elham Azizi, Edoardo M. Airoldi, James E. Galagan

Proceedings of the 31th International Conference on Machine Learning, 2014

2013

Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus <i>Neurospora crassa</i> Using FARM.

Jonathan M. Dreyfuss, Jeremy D. Zucker, Heather M. Hood, Linda R. Ocasio, Matthew S. Sachs, James E. Galagan

PLoS Comput. Biol., 2013

The <i>Mycobacterium tuberculosis</i> regulatory network and hypoxia.

James E. Galagan, Kyle J. Minch, Matthew Peterson, Anna Lyubetskaya, Elham Azizi, Linsday Sweet, Antonio Gomes, Tige R. Rustad, Gregory Dolganov, Irina Glotova, Thomas Abeel, Chris Mahwinney, Adam D. Kennedy, René Allard, William Brabant, Andrew Krueger, Suma Jaini, Brent Honda, Wen-Han Yu, Mark J. Hickey, Jeremy Zucker, Christopher Garay, Brian Weiner, Peter Sisk, Christian Stolte, Jessica K. Winkler, Yves Van de Peer, Paul Iazzetti, Diogo Camacho, Jonathan M. Dreyfuss, Yang Liu, Anca Dorhoi, Hans-Joachim Mollenkopf, Paul Drogaris, Julie Lamontagne, Yiyong Zhou, Julie Piquenot, Sang Tae Park, Sahadevan Raman, Stefan H. E. Kaufmann, Robert P. Mohney, Daniel Chelsky, D. Branch Moody, David R. Sherman, Gary K. Schoolnik

Nat., 2013

2009

Interpreting Expression Data with Metabolic Flux Models: Predicting <i>Mycobacterium tuberculosis</i> Mycolic Acid Production.

Caroline Colijn, Aaron Brandes, Jeremy Zucker, Desmond S. Lun, Brian Weiner, Maha R. Farhat, Tan-Yun Cheng, D. Branch Moody, Megan Murray, James E. Galagan

PLoS Comput. Biol., 2009

TB database: an integrated platform for tuberculosis research.

T. B. K. Reddy, Robert Riley, Farrell Wymore, Phillip Montgomery, David DeCaprio, Reinhard Engels, Marcel Gellesch, Jeremy Hubble, Dennis Jen, Heng Jin, Michael Koehrsen, Lisa Larson, Maria Mao, Michael Nitzberg, Peter Sisk, Christian Stolte, Brian Weiner, Jared White, Zachariah K. Zachariah, Gavin Sherlock, James E. Galagan, Catherine A. Ball, Gary K. Schoolnik

Nucleic Acids Res., 2009

2006

Combo: a whole genome comparative browser.

Reinhard Engels, Tamara Yu, Christopher B. Burge, Jill P. Mesirov, David DeCaprio, James E. Galagan

Bioinform., 2006

Comparative Gene Prediction using Conditional Random Fields.

Jade P. Vinson, David DeCaprio, Matthew D. Pearson, Stacey Luoma, James E. Galagan

Proceedings of the Advances in Neural Information Processing Systems 19, 2006

2005

Improving genome annotations using phylogenetic profile anomaly detection.

Tarjei S. Mikkelsen, James E. Galagan, Jill P. Mesirov

Bioinform., 2005