James E. Bray

According to our database, James E. Bray authored at least 11 papers between 1999 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Visual Analytics Exploration of PubMLST Meningitis Genomic Data.

Margaret J. Varga, Holly B. Bratcher, Keith A. Jolley, Odile B. Harrison, James E. Bray, Martin C. J. Maiden

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2017

Diversity and distribution of nuclease bacteriocins in bacterial genomes revealed using Hidden Markov Models.

Connor Sharp, James E. Bray, Nicholas G. Housden, Martin C. J. Maiden, Colin Kleanthous

PLoS Comput. Biol., 2017

A RESTful application programming interface for the PubMLST molecular typing and genome databases.

Keith A. Jolley, James E. Bray, Martin C. J. Maiden

Database J. Biol. Databases Curation, 2017

2014

Defining the Estimated Core Genome of Bacterial Populations Using a Bayesian Decision Model.

Andries J. van Tonder, Shilan Mistry, James E. Bray, Dorothea M. C. Hill, Alison J. Cody, Chris L. Farmer, Keith P. Klugman, Anne von Gottberg, Stephen D. Bentley, Julian Parkhill, Keith A. Jolley, Martin C. J. Maiden, Angela B. Brueggemann

PLoS Comput. Biol., 2014

TypOn: the microbial typing ontology.

Cátia Vaz, Alexandre P. Francisco, Mickael Silva, Keith A. Jolley, James E. Bray, Hannes Pouseele, Jörg Rothgänger, Mário Ramirez, João A. Carriço

J. Biomed. Semant., 2014

2004

A practical and robust sequence search strategy for structural genomics target selection.

James E. Bray, Russell L. Marsden, Stuart C. G. Rison, Alexei Savchenko, Aled M. Edwards, Janet M. Thornton, Christine A. Orengo

Bioinform., 2004

2003

The CATH database: an extended protein family resource for structural and functional genomics.

Frances M. G. Pearl, C. F. Bennett, James E. Bray, Andrew P. Harrison, Nigel J. Martin, Adrian J. Shepherd, Ian Sillitoe, Janet M. Thornton, Christine A. Orengo

Nucleic Acids Res., 2003

Gene3D: structural assignments for the biologist and bioinformaticist alike.

Daniel W. A. Buchan, Stuart C. G. Rison, James E. Bray, David A. Lee, Frances M. G. Pearl, Janet M. Thornton, Christine A. Orengo

Nucleic Acids Res., 2003

2001

A rapid classification protocol for the CATH Domain Database to support structural genomics.

Frances M. G. Pearl, Nigel J. Martin, James E. Bray, Daniel W. A. Buchan, Andrew P. Harrison, David A. Lee, Gabrielle A. Reeves, Adrian J. Shepherd, Ian Sillitoe, Annabel E. Todd, Janet M. Thornton, Christine A. Orengo

Nucleic Acids Res., 2001

2000

Assigning genomic sequences to CATH.

Frances M. G. Pearl, David A. Lee, James E. Bray, Ian Sillitoe, Annabel E. Todd, Andrew P. Harrison, Janet M. Thornton, Christine A. Orengo

Nucleic Acids Res., 2000

1999

The CATH Database provides insights into protein structure/function relationships.

Christine A. Orengo, Frances M. G. Pearl, James E. Bray, Annabel E. Todd, A. C. Martin, Loredana Lo Conte, Janet M. Thornton

Nucleic Acids Res., 1999