James C. Whisstock

Orcid: 0000-0003-4200-5611

According to our database1, James C. Whisstock authored at least 18 papers between 2004 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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Links

Online presence:

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Bibliography

2022
Mining folded proteomes in the era of accurate structure prediction.
PLoS Comput. Biol., 2022

Juno: a Python-based graphical package for optical system design.
CoRR, 2022

2020
PhosTransfer: A Deep Transfer Learning Framework for Kinase-Specific Phosphorylation Site Prediction in Hierarchy.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2020

Prediction of secondary structure population and intrinsic disorder of proteins using multitask deep learning.
Proceedings of the AMIA 2020, 2020

2019
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods.
Briefings Bioinform., 2019

2015
GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome.
Bioinform., 2015

2014
A New Model for Pore Formation by Cholesterol-Dependent Cytolysins.
PLoS Comput. Biol., 2014

Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets.
Bioinform., 2014

2012
Predicting giant transmembrane β-barrel architecture.
Bioinform., 2012

2011
Bioinformatic Approaches for Predicting substrates of Proteases.
J. Bioinform. Comput. Biol., 2011

Automatic generation of protein structure cartoons with Pro-origami.
Bioinform., 2011

2010
Cascleave: towards more accurate prediction of caspase substrate cleavage sites.
Bioinform., 2010

EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes.
Bioinform., 2010

2009
High-throughput protein structure determination using grid computing.
Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009

2007
eResearch Solutions for High Throughput Structural Biology.
Proceedings of the Third International Conference on e-Science and Grid Computing, 2007

2006
The REFOLD database: a tool for the optimization of protein expression and refolding.
Nucleic Acids Res., 2006

2005
Pops: a Computational Tool for Modeling and Predicting Protease Specificity.
J. Bioinform. Comput. Biol., 2005

2004
Progressive Multiple Alignment Using Sequence Triplet Optimizations and Three-residue Exchange Costs.
J. Bioinform. Comput. Biol., 2004


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