Jakub Galgonek

According to our database, Jakub Galgonek authored at least 18 papers between 2009 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2023

A comparison of approaches to accessing existing biological and chemical relational databases via SPARQL.

Jakub Galgonek, Jirí Vondrásek

J. Cheminformatics, December, 2023

2021

Amino Acid Interactions (INTAA) web server v2.0: a single service for computation of energetics and conservation in biomolecular 3D structures.

Jirí Vymetal, David Jakubec, Jakub Galgonek, Jirí Vondrásek

Nucleic Acids Res., 2021

IDSM ChemWebRDF: SPARQLing small-molecule datasets.

Jakub Galgonek, Jirí Vondrásek

J. Cheminformatics, 2021

2020

Correction to: Interoperable chemical structure search service.

Miroslav Kratochvíl, Jirí Vondrásek, Jakub Galgonek

J. Cheminformatics, 2020

2019

Interoperable chemical structure search service.

Miroslav Kratochvíl, Jirí Vondrásek, Jakub Galgonek

J. Cheminformatics, 2019

2018

Sachem: a chemical cartridge for high-performance substructure search.

Miroslav Kratochvíl, Jirí Vondrásek, Jakub Galgonek

J. Cheminformatics, 2018

2017

Amino Acid Interaction (INTAA) web server.

Jakub Galgonek, Jirí Vymetal, David Jakubec, Jirí Vondrásek

Nucleic Acids Res., 2017

2016

Advanced SPARQL querying in small molecule databases.

Jakub Galgonek, Tomás Hurt, Vendula Michlíková, Petr Onderka, Jan Schwarz, Jirí Vondrásek

J. Cheminformatics, 2016

2014

On InChI and evaluating the quality of cross-reference links.

Jakub Galgonek, Jirí Vondrásek

J. Cheminformatics, 2014

2012

SimTandem: Similarity Search in Tandem Mass Spectra.

Jirí Novák, Jakub Galgonek, David Hoksza, Tomás Skopal

Proceedings of the Similarity Search and Applications - 5th International Conference, 2012

P3S: Protein Structure Similarity Search.

Jakub Galgonek, Tomás Skopal, David Hoksza

Proceedings of the Euro-Par 2012: Parallel Processing Workshops, 2012

On the Parallelization of the SProt Measure and the TM-Score Algorithm.

Jakub Galgonek, Martin Krulis, David Hoksza

Proceedings of the Euro-Par 2012: Parallel Processing Workshops, 2012

2011

Protein sequences identification using NM-tree.

Jirí Novák, Tomás Skopal, David Hoksza, Jakub Lokoc, Jakub Galgonek

Proceedings of the Fourth International Conference on Similarity Search and Applications, 2011

On metric approximations of the SProt measure.

Jakub Galgonek, David Hoksza

Proceedings of the Fourth International Conference on Similarity Search and Applications, 2011

2010

SMILE - A Framework for Semantic Applications.

Jakub Galgonek, Tomás Knap, Martin Krulis, Martin Necaský

Proceedings of the On the Move to Meaningful Internet Systems: OTM 2010 Workshops, 2010

SProt - from local to global protein structure similarity.

Jakub Galgonek, David Hoksza

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2009

On the Effectiveness of Distances Measuring Protein Structure Similarity.

Jakub Galgonek, David Hoksza

Proceedings of the Second International Workshop on Similarity Search and Applications, 2009

Tequila - a query language for the Semantic Web.

Jakub Galgonek

Proceedings of the Dateso 2009 Annual International Workshop on DAtabases, 2009