Jakub Beránek

According to our database, Jakub Beránek authored at least 18 papers between 2018 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

HyperQueue: Efficient and ergonomic task graphs on HPC clusters.

Jakub Beránek, Ada Böhm, Gianluca Palermo, Jan Martinovic, Branislav Jansik

SoftwareX, 2024

A System Development Kit for Big Data Applications on FPGA-based Clusters: The EVEREST Approach.

Christian Pilato, Subhadeep Banik, Jakub Beránek, Fabien Brocheton, Jerónimo Castrillón, Riccardo Cevasco, Radim Cmar, Serena Curzel, Fabrizio Ferrandi, Karl F. A. Friebel, Antonella Galizia, Matteo Grasso, Paulo Silva, Jan Martinovic, Gianluca Palermo, Michele Paolino, Andrea Parodi, Antonio Parodi, Fabio Pintus, Raphael Polig, David Poulet, Francesco Regazzoni, Burkhard Ringlein, Roberto Rocco, Katerina Slaninová, Tom Slooff, Stephanie Soldavini, Felix Suchert, Mattia Tibaldi, Beat Weiss, Christoph Hagleitner

Proceedings of the Design, Automation & Test in Europe Conference & Exhibition, 2024

LIGATE - LIgand Generator and portable drug discovery platform AT Exascale.

Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Yuedong Zhang, Emanuele Vitali, Bruno Guindani, Danilo Ardagna, Cristina Silvano, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Akash Deep Biswas, Jan Martinovic, Martin Golasowski, Paulo Silva, Ada Böhm, Jakub Beránek, Jan Krenek, Branislav Jansik, Peter Thoman, Philip Salzmann, Thomas Fahringer, Torsten Schwede, Leila Tamara Alexander, Gerardo Tauriello, Janani Durairaj, Biagio Cosenza, Luigi Crisci, Andrew Emerson, Federico Ficarelli, Erik Lindahl, Sebastian Wingbermühle, Daniele Gregori, Silvano Coletti, Emanuele Sana, Philipp Gschwandtner

Proceedings of the 21st ACM International Conference on Computing Frontiers, 2024

2023

pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support.

Ondrej Vavra, Jakub Beránek, Jan Stourac, Martin Surkovský, Jiri Filipovic, Jirí Damborský, Jan Martinovic, David Bednar

Bioinform., August, 2023

Tunable and Portable Extreme-Scale Drug Discovery Platform at Exascale: the LIGATE Approach.

Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Emanuele Vitali, Cristina Silvano, Bruno Guindani, Danilo Ardagna, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Jan Martinovic, Paulo Silva, Ada Bohm, Jakub Beránek, Jan Krenek, Branislav Jansik, Biagio Cosenza, Luigi Crisci, Peter Thoman, Philip Salzmann, Thomas Fahringer, Leila T. Alexander, Gerardo Tauriello, Torsten Schwede, Janani Durairaj, Andrew Emerson, Federico Ficarelli, Sebastian Wingbermühle, Erik Lindahl, Daniele Gregori, Emanuele Sana, Silvano Coletti, Philipp Gschwandtner

Proceedings of the 20th ACM International Conference on Computing Frontiers, 2023

2022

Analysis of workflow schedulers in simulated distributed environments.

Jakub Beránek, Stanislav Böhm, Vojtech Cima

J. Supercomput., 2022

2021

GraphMineSuite: Enabling High-Performance and Programmable Graph Mining Algorithms with Set Algebra.

Maciej Besta, Zur Vonarburg-Shmaria, Yannick Schaffner, Leonardo Schwarz, Grzegorz Kwasniewski, Lukas Gianinazzi, Jakub Beránek, Kacper Janda, Tobias Holenstein, Sebastian Leisinger, Peter Tatkowski, Esref Özdemir, Adrian Balla, Marcin Copik, Philipp Lindenberger, Marek Konieczny, Onur Mutlu, Torsten Hoefler

Proc. VLDB Endow., 2021

SISA: Set-Centric Instruction Set Architecture for Graph Mining on Processing-in-Memory Systems.

Maciej Besta, Raghavendra Kanakagiri, Grzegorz Kwasniewski, Rachata Ausavarungnirun, Jakub Beránek, Konstantinos Kanellopoulos, Kacper Janda, Zur Vonarburg-Shmaria, Lukas Gianinazzi, Ioana Stefan, Juan Gómez-Luna, Marcin Copik, Lukas Kapp-Schwoerer, Salvatore Di Girolamo, Marek Konieczny, Onur Mutlu, Torsten Hoefler

CoRR, 2021

GraphMineSuite: Enabling High-Performance and Programmable Graph Mining Algorithms with Set Algebra.

Maciej Besta, Zur Vonarburg-Shmaria, Yannick Schaffner, Leonardo Schwarz, Grzegorz Kwasniewski, Lukas Gianinazzi, Jakub Beránek, Kacper Janda, Tobias Holenstein, Sebastian Leisinger, Peter Tatkowski, Esref Özdemir, Adrian Balla, Marcin Copik, Philipp Lindenberger, Pavel Kalvoda, Marek Konieczny, Onur Mutlu, Torsten Hoefler

CoRR, 2021

SISA: Set-Centric Instruction Set Architecture for Graph Mining on Processing-in-Memory Systems.

Maciej Besta, Raghavendra Kanakagiri, Grzegorz Kwasniewski, Rachata Ausavarungnirun, Jakub Beránek, Konstantinos Kanellopoulos, Kacper Janda, Zur Vonarburg-Shmaria, Lukas Gianinazzi, Ioana Stefan, Juan Gómez-Luna, Jakub Golinowski, Marcin Copik, Lukas Kapp-Schwoerer, Salvatore Di Girolamo, Nils Blach, Marek Konieczny, Onur Mutlu, Torsten Hoefler

Proceedings of the MICRO '21: 54th Annual IEEE/ACM International Symposium on Microarchitecture, 2021

A RISC-V in-network accelerator for flexible high-performance low-power packet processing.

Salvatore Di Girolamo, Andreas Kurth, Alexandru Calotoiu, Thomas Benz, Timo Schneider, Jakub Beránek, Luca Benini, Torsten Hoefler

Proceedings of the 48th ACM/IEEE Annual International Symposium on Computer Architecture, 2021

2020

PsPIN: A high-performance low-power architecture for flexible in-network compute.

Salvatore Di Girolamo, Andreas Kurth, Alexandru Calotoiu, Thomas Benz, Timo Schneider, Jakub Beránek, Luca Benini, Torsten Hoefler

CoRR, 2020

Runtime vs Scheduler: Analyzing Dask's Overheads.

Stanislav Böhm, Jakub Beránek

Proceedings of the IEEE/ACM Workflows in Support of Large-Scale Science, 2020

2019

Streaming message interface: high-performance distributed memory programming on reconfigurable hardware.

Tiziano De Matteis, Johannes de Fine Licht, Jakub Beránek, Torsten Hoefler

Proceedings of the International Conference for High Performance Computing, 2019

Network-accelerated non-contiguous memory transfers.

Salvatore Di Girolamo, Konstantin Taranov, Andreas Kurth, Michael Schaffner, Timo Schneider, Jakub Beránek, Maciej Besta, Luca Benini, Duncan Roweth, Torsten Hoefler

Proceedings of the International Conference for High Performance Computing, 2019

Alternative Paths Reordering Using Probabilistic Time-Dependent Routing.

Martin Golasowski, Jakub Beránek, Martin Surkovský, Lukás Rapant, Daniela Szturcová, Jan Martinovic, Katerina Slaninová

Proceedings of the Advances in Networked-based Information Systems, 2019

A Distributed Environment for Traffic Navigation Systems.

Jan Martinovic, Martin Golasowski, Katerina Slaninová, Jakub Beránek, Martin Surkovský, Lukás Rapant, Daniela Szturcová, Radim Cmar

Proceedings of the Complex, Intelligent, and Software Intensive Systems, 2019

2018

Haydi: Rapid Prototyping and Combinatorial Objects.

Stanislav Böhm, Jakub Beránek, Martin Surkovský

Proceedings of the Foundations of Information and Knowledge Systems, 2018