Jaewoo Kang

Orcid: 0000-0001-6798-9106

Affiliations:
  • North Carolina State University, Raleigh, USA


According to our database1, Jaewoo Kang authored at least 181 papers between 1997 and 2024.

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Bibliography

2024
Augmenting biomedical named entity recognition with general-domain resources.
J. Biomed. Informatics, 2024

PubMed knowledge graph 2.0: Connecting papers, patents, and clinical trials in biomedical science.
CoRR, 2024

CRADLE-VAE: Enhancing Single-Cell Gene Perturbation Modeling with Counterfactual Reasoning-based Artifact Disentanglement.
CoRR, 2024

Learning from Negative Samples in Generative Biomedical Entity Linking.
CoRR, 2024

OLAPH: Improving Factuality in Biomedical Long-form Question Answering.
CoRR, 2024

Small Language Models Learn Enhanced Reasoning Skills from Medical Textbooks.
CoRR, 2024

Fine-tuning CLIP Text Encoders with Two-step Paraphrasing.
CoRR, 2024

Ask Optimal Questions: Aligning Large Language Models with Retriever's Preference in Conversational Search.
CoRR, 2024

Subgraph-level Universal Prompt Tuning.
CoRR, 2024

MolPLA: A Molecular Pretraining Framework for Learning Cores, R-Groups and their Linker Joints.
CoRR, 2024

Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models.
CoRR, 2024

CompAct: Compressing Retrieved Documents Actively for Question Answering.
Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing, 2024

Fine-tuning CLIP Text Encoders with Two-step Paraphrasing.
Proceedings of the Findings of the Association for Computational Linguistics: EACL 2024, 2024

CookingSense: A Culinary Knowledgebase with Multidisciplinary Assertions.
Proceedings of the 2024 Joint International Conference on Computational Linguistics, 2024

LAPIS: Language Model-Augmented Police Investigation System.
Proceedings of the 33rd ACM International Conference on Information and Knowledge Management, 2024

DeepClair: Utilizing Market Forecasts for Effective Portfolio Selection.
Proceedings of the 33rd ACM International Conference on Information and Knowledge Management, 2024

KU-DMIS at EHRSQL 2024 : Generating SQL query via question templatization in EHR.
Proceedings of the 6th Clinical Natural Language Processing Workshop, 2024

KU-DMIS at MEDIQA-CORR 2024: Exploring the Reasoning Capabilities of Small Language Models in Medical Error Correction.
Proceedings of the 6th Clinical Natural Language Processing Workshop, 2024

2023
Evaluation of crowdsourced mortality prediction models as a framework for assessing artificial intelligence in medicine.
J. Am. Medical Informatics Assoc., December, 2023

<i>KitchenScale</i>: Learning to predict ingredient quantities from recipe contexts.
Expert Syst. Appl., August, 2023

Perceiver CPI: a nested cross-attention network for compound-protein interaction prediction.
Bioinform., January, 2023

KitchenScale: Learning to predict ingredient quantities from recipe contexts.
CoRR, 2023

ELVIS: Empowering Locality of Vision Language Pre-training with Intra-modal Similarity.
CoRR, 2023

ArkDTA: attention regularization guided by non-covalent interactions for explainable drug-target binding affinity prediction.
Bioinform., 2023

Biomedical relation extraction with knowledge base-refined weak supervision.
Database J. Biol. Databases Curation, 2023

Co-Attention Graph Pooling for Efficient Pairwise Graph Interaction Learning.
IEEE Access, 2023

HADAPS: Hierarchical Adaptive Multi-Asset Portfolio Selection.
IEEE Access, 2023

Tree of Clarifications: Answering Ambiguous Questions with Retrieval-Augmented Large Language Models.
Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing, 2023

Towards Flexible Time-to-Event Modeling: Optimizing Neural Networks via Rank Regression.
Proceedings of the ECAI 2023 - 26th European Conference on Artificial Intelligence, September 30 - October 4, 2023, Kraków, Poland, 2023

Exploring Approaches to Answer Biomedical Questions: From Pre-processing to GPT-4.
Proceedings of the Working Notes of the Conference and Labs of the Evaluation Forum (CLEF 2023), 2023

KU-DMIS-MSRA at RadSum23: Pre-trained Vision-Language Model for Radiology Report Summarization.
Proceedings of the 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, 2023

Enhancing Clinical Outcome Predictions through Auxiliary Loss and Sentence-Level Self-Attention.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Optimizing Test-Time Query Representations for Dense Retrieval.
Proceedings of the Findings of the Association for Computational Linguistics: ACL 2023, 2023

Automatic Creation of Named Entity Recognition Datasets by Querying Phrase Representations.
Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2023

LIQUID: A Framework for List Question Answering Dataset Generation.
Proceedings of the Thirty-Seventh AAAI Conference on Artificial Intelligence, 2023

2022
BERN2: an advanced neural biomedical named entity recognition and normalization tool.
Bioinform., October, 2022

Graph Transformer Networks: Learning meta-path graphs to improve GNNs.
Neural Networks, 2022

Pandemics are catalysts of scientific novelty: Evidence from COVID-19.
J. Assoc. Inf. Sci. Technol., 2022

Enhancing Label Consistency on Document-level Named Entity Recognition.
CoRR, 2022

RecipeMind: Guiding Ingredient Choices from Food Pairing to Recipe Completion using Cascaded Set Transformer.
CoRR, 2022

Deformable Graph Transformer.
CoRR, 2022

Refining Query Representations for Dense Retrieval at Test Time.
CoRR, 2022

Towards More Realistic Generation of Information-Seeking Conversations.
CoRR, 2022

Lack of Fluency is Hurting Your Translation Model.
CoRR, 2022

Sequence tagging for biomedical extractive question answering.
Bioinform., 2022

Full-text chemical identification with improved generalizability and tagging consistency.
Database J. Biol. Databases Curation, 2022

How Do Your Biomedical Named Entity Recognition Models Generalize to Novel Entities?
IEEE Access, 2022

Consistency Training with Virtual Adversarial Discrete Perturbation.
Proceedings of the 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2022

DyGRAIN: An Incremental Learning Framework for Dynamic Graphs.
Proceedings of the Thirty-First International Joint Conference on Artificial Intelligence, 2022

Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework.
Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing: EMNLP 2022 - Industry Track, Abu Dhabi, UAE, December 7, 2022

Simple Questions Generate Named Entity Recognition Datasets.
Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing, 2022

Generating Information-Seeking Conversations from Unlabeled Documents.
Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing, 2022

KU_ED at SocialDisNER: Extracting Disease Mentions in Tweets Written in Spanish.
Proceedings of The Seventh Workshop on Social Media Mining for Health Applications, 2022

Data-Centric and Model-Centric Approaches for Biomedical Question Answering.
Proceedings of the Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2022

<i>RecipeMind: </i> Guiding Ingredient Choices from Food Pairing to Recipe Completion using Cascaded Set Transformer.
Proceedings of the 31st ACM International Conference on Information & Knowledge Management, 2022

A denoised embedding space of genetic perturbation using Deep Metric Learning.
Proceedings of the IEEE International Conference on Big Data and Smart Computing, 2022

Improved Binding Affinity Prediction Using Non-Covalent Interactions and Graph Integration.
Proceedings of the IEEE International Conference on Big Data and Smart Computing, 2022

FaVIQ: FAct Verification from Information-seeking Questions.
Proceedings of the 60th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2022

2021
Crowdsourced identification of multi-target kinase inhibitors for RET- and TAU- based disease: The Multi-Targeting Drug DREAM Challenge.
PLoS Comput. Biol., 2021

Exploring the spatial reasoning ability of neural models in human IQ tests.
Neural Networks, 2021

Improving Tagging Consistency and Entity Coverage for Chemical Identification in Full-text Articles.
CoRR, 2021

Regularizing Models via Pointwise Mutual Information for Named Entity Recognition.
CoRR, 2021

How Do Your Biomedical Named Entity Models Generalize to Novel Entities?
CoRR, 2021

Predicting mechanism of action of novel compounds using compound structure and transcriptomic signature coembedding.
Bioinform., 2021

RecipeBowl: A Cooking Recommender for Ingredients and Recipes Using Set Transformer.
IEEE Access, 2021

Neo-GNNs: Neighborhood Overlap-aware Graph Neural Networks for Link Prediction.
Proceedings of the Advances in Neural Information Processing Systems 34: Annual Conference on Neural Information Processing Systems 2021, 2021

Can Language Models be Biomedical Knowledge Bases?
Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing, 2021

"Killing Me" Is Not a Spoiler: Spoiler Detection Model using Graph Neural Networks with Dependency Relation-Aware Attention Mechanism.
Proceedings of the 16th Conference of the European Chapter of the Association for Computational Linguistics: Main Volume, 2021

HOTR: End-to-End Human-Object Interaction Detection With Transformers.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2021

KU-DMIS at BioASQ 9: Data-centric and model-centric approaches for biomedical question answering.
Proceedings of the Working Notes of CLEF 2021 - Conference and Labs of the Evaluation Forum, Bucharest, Romania, September 21st - to, 2021

Learning Dense Representations of Phrases at Scale.
Proceedings of the 59th Annual Meeting of the Association for Computational Linguistics and the 11th International Joint Conference on Natural Language Processing, 2021

Learn to Resolve Conversational Dependency: A Consistency Training Framework for Conversational Question Answering.
Proceedings of the 59th Annual Meeting of the Association for Computational Linguistics and the 11th International Joint Conference on Natural Language Processing, 2021

2020
ChimerDB 4.0: an updated and expanded database of fusion genes.
Nucleic Acids Res., 2020

Can pandemics transform scientific novelty? Evidence from COVID-19.
CoRR, 2020

Building a PubMed knowledge graph.
CoRR, 2020

Learning by Semantic Similarity Makes Abstractive Summarization Better.
CoRR, 2020

BioBERT: a pre-trained biomedical language representation model for biomedical text mining.
Bioinform., 2020

Improved survival analysis by learning shared genomic information from pan-cancer data.
Bioinform., 2020

Bipartite Link Prediction by Intra-Class Connection Based Triadic Closure.
IEEE Access, 2020

Content-Aware Successive Point-of-Interest Recommendation.
Proceedings of the 2020 SIAM International Conference on Data Mining, 2020

MAPS: Multi-Agent reinforcement learning-based Portfolio management System.
Proceedings of the Twenty-Ninth International Joint Conference on Artificial Intelligence, 2020

Adversarial Subword Regularization for Robust Neural Machine Translation.
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2020, 2020

Answering Questions on COVID-19 in Real-Time.
Proceedings of the 1st Workshop on NLP for COVID-19@ EMNLP 2020, Online, December 2020, 2020

Look at the First Sentence: Position Bias in Question Answering.
Proceedings of the 2020 Conference on Empirical Methods in Natural Language Processing, 2020

Robust Neural Networks Inspired by Strong Stability Preserving Runge-Kutta Methods.
Proceedings of the Computer Vision - ECCV 2020, 2020

UnionDet: Union-Level Detector Towards Real-Time Human-Object Interaction Detection.
Proceedings of the Computer Vision - ECCV 2020, 2020

Transferability of Natural Language Inference to Biomedical Question Answering.
Proceedings of the Working Notes of CLEF 2020, 2020

Learning Graph-Based Geographical Latent Representation for Point-of-Interest Recommendation.
Proceedings of the CIKM '20: The 29th ACM International Conference on Information and Knowledge Management, 2020

A Drug-Induced Liver Injury Prediction Model using Transcriptional Response Data with Graph Neural Network.
Proceedings of the 2020 IEEE International Conference on Big Data and Smart Computing, 2020

Biomedical Entity Representations with Synonym Marginalization.
Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics, 2020

Contextualized Sparse Representations for Real-Time Open-Domain Question Answering.
Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics, 2020

2019
Multipath-DenseNet: A Supervised ensemble architecture of densely connected convolutional networks.
Inf. Sci., 2019

Contextualized Sparse Representation with Rectified N-Gram Attention for Open-Domain Question Answering.
CoRR, 2019

HATS: A Hierarchical Graph Attention Network for Stock Movement Prediction.
CoRR, 2019

KitcheNette: Predicting and Recommending Food Ingredient Pairings using Siamese Neural Networks.
CoRR, 2019

Exploring the molecular mechanisms of Traditional Chinese Medicine components using gene expression signatures and connectivity map.
Comput. Methods Programs Biomed., 2019

paraFaceTest: an ensemble of regression tree-based facial features extraction for efficient facial paralysis classification.
BMC Medical Imaging, 2019

CollaboNet: collaboration of deep neural networks for biomedical named entity recognition.
BMC Bioinform., 2019

ReSimNet: drug response similarity prediction using Siamese neural networks.
Bioinform., 2019

Can Machines Learn to Comprehend Scientific Literature?
IEEE Access, 2019

Global Stock Market Prediction Based on Stock Chart Images Using Deep Q-Network.
IEEE Access, 2019

A Neural Named Entity Recognition and Multi-Type Normalization Tool for Biomedical Text Mining.
IEEE Access, 2019

SAIN: Self-Attentive Integration Network for Recommendation.
Proceedings of the 42nd International ACM SIGIR Conference on Research and Development in Information Retrieval, 2019

Predicting Multiple Demographic Attributes with Task Specific Embedding Transformation and Attention Network.
Proceedings of the 2019 SIAM International Conference on Data Mining, 2019

Pre-trained Language Model for Biomedical Question Answering.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2019

Graph Transformer Networks.
Proceedings of the Advances in Neural Information Processing Systems 32: Annual Conference on Neural Information Processing Systems 2019, 2019

KitcheNette: Predicting and Ranking Food Ingredient Pairings using Siamese Neural Network.
Proceedings of the Twenty-Eighth International Joint Conference on Artificial Intelligence, 2019

Self-Attention Graph Pooling.
Proceedings of the 36th International Conference on Machine Learning, 2019

2018
DeepNAP: Deep neural anomaly pre-detection in a semiconductor fab.
Inf. Sci., 2018

DeepPIM: A deep neural point-of-interest imputation model.
Inf. Sci., 2018

Typeface Completion with Generative Adversarial Networks.
CoRR, 2018

BTNET : boosted tree based gene regulatory network inference algorithm using time-course measurement data.
BMC Syst. Biol., 2018

In silico drug combination discovery for personalized cancer therapy.
BMC Syst. Biol., 2018

Classification of lung nodules in CT scans using three-dimensional deep convolutional neural networks with a checkpoint ensemble method.
BMC Medical Imaging, 2018

Deep learning of mutation-gene-drug relations from the literature.
BMC Bioinform., 2018

Chemical-gene relation extraction using recursive neural network.
Database J. Biol. Databases Curation, 2018

A Deep Neural Spoiler Detection Model Using a Genre-Aware Attention Mechanism.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2018

Content-Aware Hierarchical Point-of-Interest Embedding Model for Successive POI Recommendation.
Proceedings of the Twenty-Seventh International Joint Conference on Artificial Intelligence, 2018

Ranking Paragraphs for Improving Answer Recall in Open-Domain Question Answering.
Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, Brussels, Belgium, October 31, 2018

Learning User Preferences and Understanding Calendar Contexts for Event Scheduling.
Proceedings of the 27th ACM International Conference on Information and Knowledge Management, 2018

2017
ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data mining.
Nucleic Acids Res., 2017

Constructing and Evaluating a Novel Crowdsourcing-based Paraphrased Opinion Spam Dataset.
Proceedings of the 26th International Conference on World Wide Web, 2017

Name Nationality Classification with Recurrent Neural Networks.
Proceedings of the Twenty-Sixth International Joint Conference on Artificial Intelligence, 2017

2016
Efficient quantitative assessment of facial paralysis using iris segmentation and active contour-based key points detection with hybrid classifier.
BMC Medical Imaging, 2016

Prioritizing biological pathways by recognizing context in time-series gene expression data.
BMC Bioinform., 2016

HiPub: translating PubMed and PMC texts to networks for knowledge discovery.
Bioinform., 2016

BRONCO: Biomedical entity Relation ONcology COrpus for extracting gene-variant-disease-drug relations.
Database J. Biol. Databases Curation, 2016

SEMO: Searching Majority Opinions on Movies using SNS QA Threads.
Proceedings of the 25th International Conference on World Wide Web, 2016

2015
DSigDB: drug signatures database for gene set analysis.
Bioinform., 2015

Identifying kinase dependency in cancer cells by integrating high-throughput drug screening and kinase inhibition data.
Bioinform., 2015

Smith Search: Opinion-Based Restaurant Search Engine.
Proceedings of the 24th International Conference on World Wide Web Companion, 2015

Deep Semantic Frame-Based Deceptive Opinion Spam Analysis.
Proceedings of the 24th ACM International Conference on Information and Knowledge Management, 2015

2014
Development of Test Toolkit of Hard Review to Evaluate a Random Clinical Decision Support System for the Management of Chronic Adult Diseases.
Wirel. Pers. Commun., 2014

Aggregative and stochastic model of main path identification: a case study on graphene.
Scientometrics, 2014

Bioinformatics-driven discovery of rational combination for overcoming EGFR-mutant lung cancer resistance to EGFR therapy.
Bioinform., 2014

BEReX: Biomedical Entity-Relationship eXplorer.
Bioinform., 2014

2013
A quantitative approach to recommend promising technologies for SME innovation: a case study on knowledge arbitrage from LCD to solar cell.
Scientometrics, 2013

On the efficacy of per-relation basis performance evaluation for PPI extraction and a high-precision rule-based approach.
BMC Medical Informatics Decis. Mak., 2013

Mining Botnets and Their Evolution Patterns.
J. Comput. Sci. Technol., 2013

Comparative meta-analysis between human and mouse cancer microarray data reveals critical pathways.
Int. J. Data Min. Bioinform., 2013

2012
SignatureClust: a tool for landmark gene-guided clustering.
Soft Comput., 2012

Adaptive pattern mining model for early detection of botnet-propagation scale.
Secur. Commun. Networks, 2012

BOSS: context-enhanced search for biomedical objects.
BMC Medical Informatics Decis. Mak., 2012

A 2-phased approach for detecting multiple loci associations with traits.
Int. J. Data Min. Bioinform., 2012

CONSENTO: a consensus search engine for answering subjective queries.
Proceedings of the 21st World Wide Web Conference, 2012

High precision rule based PPI extraction and per-pair basis performance evaluation.
Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics, 2012

CONSENTO: a new framework for opinion based entity search and summarization.
Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2012

Drug-drug interaction analysis using heterogeneous biological information network.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

2010
Electrodiagnosis support system for localizing neural injury in an upper limb.
J. Am. Medical Informatics Assoc., 2010

Efficient skycube computation using point and domain-based filtering.
Inf. Sci., 2010

A scalable method for detecting multiple loci associated with traits using TF-IDF weighting and association rule mining.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2009
Multivariable stream data classification using motifs and their temporal relations.
Inf. Sci., 2009

A cube framework for incorporating inter-gene information into biological data mining.
Int. J. Data Min. Bioinform., 2009

Empirical Bayes analysis of unreplicated microarray data.
Comput. Stat., 2009

Using Gene Pair Combinations to Improve the Accuracy of the PAM Classifier.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

2008
Schema Matching Using Interattribute Dependencies.
IEEE Trans. Knowl. Data Eng., 2008

Microarray data mining using landmark gene-guided clustering.
BMC Bioinform., 2008

Record Linkage as DNA Sequence Alignment Problem.
Proceedings of the International Workshop on Quality in Databases and Management of Uncertain Data, 2008

2007
Are your citations clean?
Commun. ACM, 2007

Exploiting inter-gene information for microarray data integration.
Proceedings of the 2007 ACM Symposium on Applied Computing (SAC), 2007

Efficient Subsequence Matching Using the Longest Common Subsequence with a Dual Match Index.
Proceedings of the Machine Learning and Data Mining in Pattern Recognition, 2007

Selective Approach To Handling Topic Oriented Tasks On The World Wide Web.
Proceedings of the IEEE Symposium on Computational Intelligence and Data Mining, 2007

HICCUP: Hierarchical Clustering Based Value Imputation using Heterogeneous Gene Expression Microarray Datasets.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
ARCS: an aggregated related column scoring scheme for aligned sequences.
Bioinform., 2006

Selective hypertext induced topic search.
Proceedings of the 15th international conference on World Wide Web, 2006

An effective approach to entity resolution problem using quasi-clique and its application to digital libraries.
Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2006

Improving Grouped-Entity Resolution Using Quasi-Cliques.
Proceedings of the 6th IEEE International Conference on Data Mining (ICDM 2006), 2006

Multivariate Stream Data Classification Using Simple Text Classifiers.
Proceedings of the Database and Expert Systems Applications, 17th International Conference, 2006

2005
Identifying Value Mappings for Data Integration: An Unsupervised Approach.
Proceedings of the Web Information Systems Engineering, 2005

Comparative study of name disambiguation problem using a scalable blocking-based framework.
Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2005

Effective and scalable solutions for mixed and split citation problems in digital libraries.
Proceedings of the IQIS 2005, 2005

A scalable architecture for SIP infrastructure using content addressable networks.
Proceedings of IEEE International Conference on Communications, 2005

Multivariate Stream Data Reduction in Sensor Network Applications.
Proceedings of the Embedded and Ubiquitous Computing - EUC 2005 Workshops, 2005

Integrating Heterogeneous Microarray Data Sources Using Correlation Signatures.
Proceedings of the Data Integration in the Life Sciences, Second InternationalWorkshop, 2005

Establishing value mappings using statistical models and user feedback.
Proceedings of the 2005 ACM CIKM International Conference on Information and Knowledge Management, Bremen, Germany, October 31, 2005

2003
On Schema Matching with Opaque Column Names and Data Values.
Proceedings of the 2003 ACM SIGMOD International Conference on Management of Data, 2003

Evaluating Window Joins over Unbounded Streams.
Proceedings of the 19th International Conference on Data Engineering, 2003

2001
The Niagara Internet Query System.
IEEE Data Eng. Bull., 2001

1998
Overview of Strudel - A Web-Site Management System.
Netw. Inf. Syst. J., 1998

Catching the Boat with Strudel: Experiences with a Web-Site Management System.
Proceedings of the SIGMOD 1998, 1998

1997
STRUDEL: A Web-site Management System.
Proceedings of the SIGMOD 1997, 1997


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