Jadwiga R. Bienkowska

According to our database, Jadwiga R. Bienkowska authored at least 16 papers between 1997 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2019

Detecting somatic mutations with high accuracy in plasma cell-free DNA with TNER2.

Shibing Deng, Joy Hsu, Jadwiga R. Bienkowska, Paul A. Rejto, Tao Xie

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018

TNER: a novel background error suppression method for mutation detection in circulating tumor DNA.

Shibing Deng, Maruja Lira, Donghui Huang, Kai Wang, Crystal Valdez, Jennifer Kinong, Paul A. Rejto, Jadwiga R. Bienkowska, James Hardwick, Tao Xie

BMC Bioinform., 2018

2015

Discovering What Dimensionality Reduction Really Tells Us About RNA-Seq Data.

Sean Simmons, Jian Peng, Jadwiga R. Bienkowska, Bonnie Berger

J. Comput. Biol., 2015

2014

ProbeSelect: selecting differentially expressed probes in transcriptional profile data.

Raghavendra Hosur, Suzanne Szak, Alice Thai, Norm Allaire, Jadwiga R. Bienkowska

Bioinform., 2014

2011

Causal Modeling Using Network Ensemble Simulations of Genetic and Gene Expression Data Predicts Genes Involved in Rheumatoid Arthritis.

Heming Xing, Paul D. McDonagh, Jadwiga R. Bienkowska, Tanya Cashorali, Karl Runge, Robert E. Miller, Dave DeCaprio, Bruce Church, Ronenn Roubenoff, Iya G. Khalil, John Carulli

PLoS Comput. Biol., 2011

2008

Optimal contact map alignment of protein-protein interfaces.

Vinay Pulim, Bonnie Berger, Jadwiga R. Bienkowska

Bioinform., 2008

2007

Lthreader: Prediction of Ligand-Receptor Interactions Using Localized Threading.

Vinay Pulim, Jadwiga R. Bienkowska, Bonnie Berger

Proceedings of the Biocomputing 2007, 2007

PANP - a New Method of Gene Detection on Oligonucleotide Expression Arrays.

Peter Warren, Deanne M. Taylor, Paolo G. V. Martini, Jennifer Jackson, Jadwiga R. Bienkowska

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2005

GOTrees: Predicting GO Associations from Protein Domain Composition Using Decision Trees.

Boris Hayete, Jadwiga R. Bienkowska

Proceedings of the Biocomputing 2005, 2005

2002

Using fold recognition to search for useful proteins: Bayesian approach to fold recognition.

Jadwiga R. Bienkowska

Briefings Bioinform., 2002

2001

Automatic Pattern Embedding in Protein Structure Models.

Jadwiga R. Bienkowska, Hongxian He, Temple F. Smith

IEEE Intell. Syst., 2001

2000

Comprehensive statistical method for protein fold recognition.

Jadwiga R. Bienkowska, Lihua Yu, Sophia Zarakhovich, Robert G. Rogers, Temple F. Smith

Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

1999

Performance of Threading Scoring Functions Designed Using New Optimization Method.

Jadwiga R. Bienkowska, Robert G. Rogers, Temple F. Smith

J. Comput. Biol., 1999

A method for optimal design of a threading scoring function.

Jadwiga R. Bienkowska, Robert G. Rogers, Temple F. Smith

Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999

1997

Current Limitations to Protein Threading Approaches.

Temple F. Smith, Loredana Lo Conte, Jadwiga R. Bienkowska, Chrysanthe Gaitatzes, Robert G. Rogers, Richard H. Lathrop

J. Comput. Biol., 1997

The threading approach to the inverse protein folding problem.

Temple F. Smith, Loredana Lo Conte, Jadwiga R. Bienkowska, Robert G. Rogers, Chrysanthe Gaitatzes, Richard H. Lathrop

Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, 1997