Jacob Köhler

According to our database, Jacob Köhler authored at least 19 papers between 2000 and 2014.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2014

Molecular Information Fusion in Ondex.

Jan Taubert, Jacob Köhler

Proceedings of the Approaches in Integrative Bioinformatics - Towards the Virtual Cell, 2014

2009

Linking Life Sciences Data Using Graph-Based Mapping.

Jan Taubert, Matthew Hindle, Artem Lysenko, Jochen Weile, Jacob Köhler, Christopher J. Rawlings

Proceedings of the Data Integration in the Life Sciences, 6th International Workshop, 2009

2008

PHI-base update: additions to the pathogen-host interaction database.

Rainer Winnenburg, Martin Urban, Andrew M. Beacham, Thomas K. Baldwin, Sabrina Holland, Magdalen Lindeberg, Hilde Hansen, Christopher J. Rawlings, Kim E. Hammond-Kosack, Jacob Köhler

Nucleic Acids Res., 2008

Graph-based sequence annotation using a data integration approach.

Robert Pesch, Artem Lysenko, Matthew Hindle, Keywan Hassani-Pak, Ralf Thiele, Christopher J. Rawlings, Jacob Köhler, Jan Taubert

J. Integr. Bioinform., 2008

2007

The OXL format for the exchange of integrated datasets.

Jan Taubert, Klaus Peter Sieren, Matthew Hindle, Berend Hoekman, Rainer Winnenburg, Stephan Philippi, Christopher J. Rawlings, Jacob Köhler

J. Integr. Bioinform., 2007

2006

Automated Structure Extraction and XML Conversion of Life Science Database Flat Files.

Stephan Philippi, Jacob Köhler

IEEE Trans. Inf. Technol. Biomed., 2006

PHI-base: a new database for pathogen host interactions.

Rainer Winnenburg, Thomas K. Baldwin, Martin Urban, Christopher J. Rawlings, Jacob Köhler, Kim E. Hammond-Kosack

Nucleic Acids Res., 2006

Ontology based text indexing and querying for the semantic web.

Jacob Köhler, Stephan Philippi, Michael Specht, Alexander Rüegg

Knowl. Based Syst., 2006

Quality control for terms and definitions in ontologies and taxonomies.

Jacob Köhler, Katherine Munn, Alexander Rüegg, Andre Skusa, Barry Smith

BMC Bioinform., 2006

Graph-based analysis and visualization of experimental results with ONDEX.

Jacob Köhler, Jan Baumbach, Jan Taubert, Michael Specht, Andre Skusa, Alexander Rüegg, Christopher J. Rawlings, Paul Verrier, Stephan Philippi

Bioinform., 2006

2005

Extraction of biological interaction networks from scientific literature.

Andre Skusa, Alexander Rüegg, Jacob Köhler

Briefings Bioinform., 2005

2004

Using XML Technology for the Ontology-Based Semantic Integration of Life Science Databases.

Stephan Philippi, Jacob Köhler

IEEE Trans. Inf. Technol. Biomed., 2004

Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalized Data Structures.

Jacob Köhler, Christopher J. Rawlings, Paul Verrier, Rowan A. C. Mitchell, Andre Skusa, Alexander Rüegg, Stephan Philippi

Silico Biol., 2004

On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology.

Barry Smith, Jacob Köhler, Anand Kumar

Proceedings of the Data Integration in the Life Sciences, First International Workshop, 2004

2003

SEMEDA (semantic meta database): ontology based semantic integration of biological databases.

Jacob Köhler

PhD thesis, 2003

SEMEDA: ontology based semantic integration of biological databases.

Jacob Köhler, Stephan Philippi, Matthias Lange

Bioinform., 2003

2002

The Semantic Metadatabase (SEMEDA): Ontology Based Integration of Federated Molecular Biological Data Sources.

Jacob Köhler, Steffen Schulze-Kremer

Silico Biol., 2002

The biology Petri net markup language.

Ming Chen, Andreas Freier, Jacob Köhler, Alexander Rüegg

Proceedings of the Prozessorientierte Methoden und Werkzeuge für die Entwicklung von Informationssystemen, 2002

2000

Logical and Semantic Database Integration.

Jacob Köhler, Matthias Lange, Ralf Hofestädt, Steffen Schulze-Kremer

Proceedings of the 1st IEEE International Symposium on Bioinformatics and Biomedical Engineering, 2000