Ivo Grosse

Orcid: 0000-0001-5318-4825

Affiliations:
  • Martin Luther University of Halle-Wittenberg, Germany


According to our database1, Ivo Grosse authored at least 53 papers between 1997 and 2021.

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Bibliography

2021
tSFM 1.0: tRNA Structure-Function Mapper.
Bioinform., 2021

2019
Algorithms for learning parsimonious context trees.
Mach. Learn., 2019

Prediction of regulatory targets of alternative isoforms of the epidermal growth factor receptor in a glioblastoma cell line.
BMC Bioinform., 2019

2018
Optimal Block-Based Trimming for Next Generation Sequencing.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

myTAI: evolutionary transcriptomics with R.
Bioinform., 2018

2017
Combining phylogenetic footprinting with motif models incorporating intra-motif dependencies.
BMC Bioinform., 2017

Unrealistic phylogenetic trees may improve phylogenetic footprinting.
Bioinform., 2017

InMoDe: tools for learning and visualizing intra-motif dependencies of DNA binding sites.
Bioinform., 2017

2016
Bioinformatics challenges of next generation sequencing.
it Inf. Technol., 2016

2015
Computational Recognition of RNA Splice Sites by Exact Algorithms for the Quadratic Traveling Salesman Problem.
Comput., 2015

DiffLogo: a comparative visualization of sequence motifs.
BMC Bioinform., 2015

BiNChE: A web tool and library for chemical enrichment analysis based on the ChEBI ontology.
BMC Bioinform., 2015

Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data.
BMC Bioinform., 2015

PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R.
Bioinform., 2015

Dealing with small data: On the generalization of context trees.
Proceedings of the 32nd International Conference on Machine Learning, 2015

2014
Exact algorithms and heuristics for the Quadratic Traveling Salesman Problem with an application in bioinformatics.
Discret. Appl. Math., 2014

DRUMS: Disk Repository with Update Management and Select option for high throughput sequencing data.
BMC Bioinform., 2014

Explaining gene responses by linear modeling.
Proceedings of the German conference on bioinformatics 2014, September 28, 2014

A general approach for discriminative de novo motif discovery from high-throughput data.
Proceedings of the German conference on bioinformatics 2014, September 28, 2014

Explorative Analysis of Heterogeneous, Unstructured, and Uncertain Data - A Computer Science Perspective on Biodiversity Research.
Proceedings of the DATA 2014, 2014

On Optimal Read Trimming in Next Generation Sequencing and Its Complexity.
Proceedings of the Algorithms for Computational Biology - First International Conference, 2014

Robust learning of inhomogeneous PMMs.
Proceedings of the Seventeenth International Conference on Artificial Intelligence and Statistics, 2014

2013
Dispom: a Discriminative de-novo Motif Discovery Tool Based on the Jstacs Library.
J. Bioinform. Comput. Biol., 2013

Bayesian Conditional Gaussian Network Classifiers with Applications to Mass Spectra Classification.
CoRR, 2013

Inhomogeneous Parsimonious Markov Models.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2013

Extended Sunflower Hidden Markov Models for the recognition of homotypic cis-regulatory modules}.
Proceedings of the German Conference on Bioinformatics 2013, 2013

2012
Parsimonious Higher-Order Hidden Markov Models for Improved Array-CGH Analysis with Applications to <i>Arabidopsis thaliana</i>.
PLoS Comput. Biol., 2012

Jstacs: A Java Framework for Statistical Analysis and Classification of Biological Sequences.
J. Mach. Learn. Res., 2012

Functional microRNA targets in protein coding sequences.
Bioinform., 2012

2011
De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference.
PLoS Comput. Biol., 2011

Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models.
Bioinform., 2011

2010
miRGen 2.0: a database of microRNA genomic information and regulation.
Nucleic Acids Res., 2010

Unifying generative and discriminative learning principles.
BMC Bioinform., 2010

Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis.
BMC Bioinform., 2010

Predicting miRNA targets utilizing an Extended Profile HMM.
Proceedings of the German Conference on Bioinformatics 2010, 2010

2009
Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data.
Bioinform., 2009

Array-based Genome Comparison of Arabidopsis Ecotypes using Hidden Markov Models.
Proceedings of the BIOSIGNALS 2009, 2009

2008
Utilizing Promoter Pair Orientations for HMM-based Analysis of ChIP-chip Data.
Proceedings of the German Conference on Bioinformatics, 2008

2007
Using Data Warehouse Technology in Crop Plant Bioinformatics.
J. Integr. Bioinform., 2007

Recognition of cis-Regulatory Elements with Vombat.
J. Bioinform. Comput. Biol., 2007

Recognition of splice sites using maximum conditional likelihood.
Proceedings of the LWA 2007: Lernen - Wissen, 2007

On the relevance of model orders to discriminative learning of Markov models.
Proceedings of the LWA 2007: Lernen - Wissen, 2007

Supervised Posteriors for DNA-motif Classification.
Proceedings of the German Conference on Bioinformatics, 2007

2006
VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees.
Nucleic Acids Res., 2006

Meta-All: a system for managing metabolic pathway information.
BMC Bioinform., 2006

Data Structures for Genome Annotation, Alternative Splicing, and Validation.
Proceedings of the Data Integration in the Life Sciences, Third International Workshop, 2006

2005
CR-EST: a resource for crop ESTs.
Nucleic Acids Res., 2005

Identification of transcription factor binding sites with variable-order Bayesian networks.
Bioinform., 2005

2004
Extreme Value Distribution Based Gene Selection Criteria for Discriminant Microarray Data Analysis Using Logistic Regression.
J. Comput. Biol., 2004

Comments on "linguistic features in eukaryotic genomes".
Complex., 2004

2003
Gene selection criterion for discriminant microarray data analysis based on extreme value distributions.
Proceedings of the Sventh Annual International Conference on Computational Biology, 2003

2002
Applications of Recursive Segmentation to the Analysis of DNA Sequences.
Comput. Chem., 2002

1997
DNA visual and analytic data mining.
Proceedings of the 8th IEEE Visualization Conference, 1997


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